PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00056.100
Common NameJCGZ_09890, LOC105635995
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 342aa    MW: 38388.2 Da    PI: 7.1674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00056.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13163210355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Jcr4S00056.100 163 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 210
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-17164226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-12165214No hitNo description
SMARTSM003531.2E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEISSISGLS ELEMEDPSFI EQWPMNSIDD LSLLPLVAAF GENYMQHSLI NNLKIPMDTS  60
SSTTTIVRPT KQLKPNPLHN LPNPQPSFSP NNILSFANSN QLMGSIVKPK EEAVLCSKSI  120
NNTTPPSDML IPQGSIMNQN YMFKACQGAK RINTNNGRLS QSQDHIIAER KRREKLSQRF  180
IALSAIVPGL KKMDKASVLG DAIKYLKQLQ ERVKTLEEQT KRKTMESVVI VKKSQLLFCE  240
DDSSSSDESF SKGPFDETLP EIEARICDKH VLIRIHCEIR KGVLEKTIAE VEKLHLNIIN  300
SSVLTFGSSA LDVTIIAQMD SEYEMSVKDL VKNLHSAFKF FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14164213857Transcription factor MYC2
5gnj_B3e-14164213857Transcription factor MYC2
5gnj_E3e-14164213857Transcription factor MYC2
5gnj_F3e-14164213857Transcription factor MYC2
5gnj_G3e-14164213857Transcription factor MYC2
5gnj_I3e-14164213857Transcription factor MYC2
5gnj_M3e-14164213857Transcription factor MYC2
5gnj_N3e-14164213857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRE
2169174RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074541.10.0transcription factor bHLH25
RefseqXP_020535698.10.0transcription factor bHLH25
TrEMBLA0A067KLN80.0A0A067KLN8_JATCU; Uncharacterized protein
STRINGcassava4.1_011057m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-63bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]