PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00053.100

Common Name

JCGZ_21957, LOC105650022

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 343aa MW: 38810.3 Da PI: 5.3769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00053.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.5e-06	220	263	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++r+RR+ri +++ L l+P++ s +++ ++Y+k Lq Jcr4S00053.100 220 RADRQRRERIAERLKALHNLVPQS-----VEGSQTAMVDDIIDYVKFLQ 263 579********************8.....56788888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.995	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.23E-9	216	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-5	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-8	220	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-6	221	267	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEGQNCYQNP LELMLPNLDG IDNHVSYGAD DDLNQHSVMS DGRSKNMTNS LPLPQSQWFH 60 CQRTPQNYYE FLTENSSLVE KAPTHVLESI PQTVSDSHFI QGMTGIQTEL LYNSSGMACG 120 SNPVDSSSDM DAWKLNLHPC IFNVDNQEDS LNVRCLKQND EGDPVKKCKC LQHHSKSQSH 180 TSWEEEPSEA IGNLSYSRPR AKVAASVFLS NSSYNVSRQR ADRQRRERIA ERLKALHNLV 240 PQSVEGSQTA MVDDIIDYVK FLQLQVKELS RSRLGGELRS DPSIFLEGYH HYIVHEQFRT 300 EPLEETFTRL LEVNPSAATK FLESKGLFVM PMALADTISQ QSI

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEGQNCYQNP LELMLPNLDG IDNHVSYGAD DDLNQHSVMS DGRSKNMTNS LPLPQSQWFH  60
CQRTPQNYYE FLTENSSLVE KAPTHVLESI PQTVSDSHFI QGMTGIQTEL LYNSSGMACG  120
SNPVDSSSDM DAWKLNLHPC IFNVDNQEDS LNVRCLKQND EGDPVKKCKC LQHHSKSQSH  180
TSWEEEPSEA IGNLSYSRPR AKVAASVFLS NSSYNVSRQR ADRQRRERIA ERLKALHNLV  240
PQSVEGSQTA MVDDIIDYVK FLQLQVKELS RSRLGGELRS DPSIFLEGYH HYIVHEQFRT  300
EPLEETFTRL LEVNPSAATK FLESKGLFVM PMALADTISQ QSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092278.1	0.0	uncharacterized protein LOC105650022
Refseq	XP_012092279.1	0.0	uncharacterized protein LOC105650022
TrEMBL	A0A067JCB4	0.0	A0A067JCB4_JATCU; Uncharacterized protein
STRING	XP_002520769.1	1e-114	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	4e-18	LJRHL1-like 2

Link Out ? help Back to Top
Entrez Gene	105650022

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]