PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00052.80
Common NameJCGZ_07085, LOC105637553, WRKY03
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 438aa    MW: 48368 Da    PI: 8.7031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00052.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.5e-27127184259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg +WrKYGqK+vkgs+ +rsYYrC++++C++kkkv+r+++ +++++++Y g+H+h+
  Jcr4S00052.80 127 SDGNSWRKYGQKQVKGSKSSRSYYRCSHSNCHAKKKVQRCDHSGRIIDVVYIGHHDHD 184
                    699******************************************************7 PP
2WRKY45.41.6e-143203582159
                    -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +sYYrCtsagCp++k+ver+++d ++ +itYeg+H+h+
  Jcr4S00052.80 320 RKSYYRCTSAGCPSRKHVERNTDDATTATITYEGKHDHD 358
                    57************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-26116185IPR003657WRKY domain
SuperFamilySSF1182902.75E-24123185IPR003657WRKY domain
SMARTSM007746.8E-29126185IPR003657WRKY domain
PROSITE profilePS5081121.7127186IPR003657WRKY domain
PfamPF031064.5E-22128183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-14307360IPR003657WRKY domain
PROSITE profilePS5081119.256308360IPR003657WRKY domain
SuperFamilySSF1182902.75E-15311360IPR003657WRKY domain
SMARTSM007744.0E-15313359IPR003657WRKY domain
PfamPF031067.6E-11321357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MRKSRVLYSN GSTYDCPSFS NLLKSVLGTN SSSVRFQGEY ETYQQDIVVS TEPKLAERQL  60
ELKVECSNPS NIISPVAPAE IFEPHSAPPI PKPMSILHKD LPGQVLEQPN SDHNTSLSHI  120
VMETPPSDGN SWRKYGQKQV KGSKSSRSYY RCSHSNCHAK KKVQRCDHSG RIIDVVYIGH  180
HDHDVSRNKC NLLGRSVSSV RLAAGSLVDS VQKLDSEGIS ICAEDARQSS VHVAESEQLS  240
SSSSNGNVGI KVEEQNSNDI ESTKFGVRHQ KKSSTGIVDS EVQEKYNWLR NRIKERSEGT  300
KIVLQAAADG GSSNDGYRWR KSYYRCTSAG CPSRKHVERN TDDATTATIT YEGKHDHDMP  360
VAKKQKGSES LAHISSATIV KGDHCKKTRS LSSKRISHKW SVGKEGDLMD EKVLELGGEK  420
ALESAQTLLS IGIELRPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-15113360174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1916430.0KC191643.1 Jatropha curcas isolate IC565735 WRKY transcription factor mRNA, complete cds.
GenBankKC4700060.0KC470006.1 Jatropha curcas WRKY transcription factor 03 (WRKY03) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076428.10.0probable WRKY transcription factor 4
TrEMBLM9TMB90.0M9TMB9_JATCU; WRKY transcription factor 03
STRINGcassava4.1_008787m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16159610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.14e-49WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Agarwal P, et al.
    Pathogenesis-related gene, JcPR-10a from Jatropha curcas exhibit RNase and antifungal activity.
    Mol. Biotechnol., 2013. 54(2): p. 412-25
    [PMID:22763562]
  2. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]