PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00050.70

Common Name

JCGZ_06111, LOC105634825

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 747aa MW: 86368.8 Da PI: 4.883

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00050.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.8	1.6e-22	134	218	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH++ Jcr4S00050.70 134 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFD 218 69**************************************99888.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-20	134	218	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-29	339	432	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9	625	661	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-5	636	663	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MAMIEIEEGS QNSEQLLEEE GDDLEFDSNS LEIEGNDLEI EGNDLEIDGN GIEIEGNGLE 60 IEDNNLEIES HELETGGNDV ESNCDQVLHI EDHGQDNYRG NTPAVDGQNG ESQGNEYPPP 120 VVGMEFESYD DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAN 180 SRRKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHSFDPE RAQNSKSHKK MDAGSKRKVE 240 PTVDVEVRTI KLYRTAAVDS FGYGSPNSNE GENSHYVDRS KRLKLQKGDA KIIFNYFSQA 300 QLINPNFFYL MDLSDEGFLK NVFWIDSRSR AAYAYFGDVV IFDTTCLSNK YEIPLFTFVG 360 VNHHGQPIPL GYGLLADETF ETYIWLFRAW LTCVLGRPPQ TVITDHCKVM QSAIAEVFPR 420 AHHRLCLSRV AQRISQSLGE LQDYETFQMV FNTTVYNTLK VDEFEMAWEG MIQQFGIANH 480 EWLRSLYEDR ERWAPVYSKD SFYAGMGTFE RGESMIQFFD GYVHHQTSLR EFLDMYGLVL 540 QKKHHKEALD DVESRDSSSM LRTSSYYELQ LSKVYTNEIF RKFQDEVVMM SSCFSITQVH 600 ANGSVVTYMI KERECEENLS NNRTFEVLYD KSGAEVRCIC GCFNFKGYLC RHALCILHYN 660 GVEEIPYQYI LARWRKDFKR LYVPDLGSNS VDIGNPVQWF DHLYKRAMQV VEEGMISQDH 720 YMVAWQAFKE SLNKVRLVAD KHVLIDH

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MAMIEIEEGS QNSEQLLEEE GDDLEFDSNS LEIEGNDLEI EGNDLEIDGN GIEIEGNGLE  60
IEDNNLEIES HELETGGNDV ESNCDQVLHI EDHGQDNYRG NTPAVDGQNG ESQGNEYPPP  120
VVGMEFESYD DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAN  180
SRRKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHSFDPE RAQNSKSHKK MDAGSKRKVE  240
PTVDVEVRTI KLYRTAAVDS FGYGSPNSNE GENSHYVDRS KRLKLQKGDA KIIFNYFSQA  300
QLINPNFFYL MDLSDEGFLK NVFWIDSRSR AAYAYFGDVV IFDTTCLSNK YEIPLFTFVG  360
VNHHGQPIPL GYGLLADETF ETYIWLFRAW LTCVLGRPPQ TVITDHCKVM QSAIAEVFPR  420
AHHRLCLSRV AQRISQSLGE LQDYETFQMV FNTTVYNTLK VDEFEMAWEG MIQQFGIANH  480
EWLRSLYEDR ERWAPVYSKD SFYAGMGTFE RGESMIQFFD GYVHHQTSLR EFLDMYGLVL  540
QKKHHKEALD DVESRDSSSM LRTSSYYELQ LSKVYTNEIF RKFQDEVVMM SSCFSITQVH  600
ANGSVVTYMI KERECEENLS NNRTFEVLYD KSGAEVRCIC GCFNFKGYLC RHALCILHYN  660
GVEEIPYQYI LARWRKDFKR LYVPDLGSNS VDIGNPVQWF DHLYKRAMQV VEEGMISQDH  720
YMVAWQAFKE SLNKVRLVAD KHVLIDH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073139.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A067KXP9	0.0	A0A067KXP9_JATCU; Uncharacterized protein
STRING	POPTR_0003s02550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Entrez Gene	105634825

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]