PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00047.160
Common NameGRAS29, JCGZ_17669, LOC105644956
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 371aa    MW: 41591.2 Da    PI: 6.7485
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00047.160genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS159.62.7e-491222641149
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lLlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+++r+ +s+ ++++ l   +       ++ +++++f+++sP++kf+
  Jcr4S00047.160 122 LITLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMSSRVINSWLGICSPLINHR-------NVHSSFQIFNNISPFIKFA 209
                     5789*******************************9999**********************97664333.......3457899************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
                     h+t NqaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+g+
  Jcr4S00047.160 210 HFTSNQAILEAFQRRDRVHIIDLDIMQGLQWPALFHILATRIEGPPHVRMTGLGA 264
                     ****************************************************985 PP
2GRAS64.71.9e-20264367273374
            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee..aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                     a l++e++ r  vE  ll rei n++a  g +r  +  +l++Wr+ + +  + F +vp+s + ++qa+l+l++++  +gy++ + +g+l lgWkd
  Jcr4S00047.160 264 AFLGSEDNSRYRVESCLLYREINNILAIGGPARSGED-KLRHWRSEIARrnSSFMQVPMSGNSMAQAQLILNMFPpAHGYSLVQGDGTLKLGWKD 357
                     56788999************************77665.5*******9764599****************************************** PP

            GRAS 365 rpLvsvSaWr 374
                      +L+++SaW+
  Jcr4S00047.160 358 TSLFTASAWT 367
                     *********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.14396371IPR005202Transcription factor GRAS
PfamPF035149.2E-47122264IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGVIAVLGFQ SATVNPNAMA KPAMERNELS EWVEHITKQL IDDMPEMTSE SMQNDSRMLC  60
DQENSSFLMG NNGLDQFRPR KSIRRSHFDQ ENQFHCNNIS NEHENTNGGG GLTRVDEQGL  120
NLITLLLECA VAISVDNLGE AHRMLLELTQ MASPYGPSCA ERVVAYFAKA MSSRVINSWL  180
GICSPLINHR NVHSSFQIFN NISPFIKFAH FTSNQAILEA FQRRDRVHII DLDIMQGLQW  240
PALFHILATR IEGPPHVRMT GLGAFLGSED NSRYRVESCL LYREINNILA IGGPARSGED  300
KLRHWRSEIA RRNSSFMQVP MSGNSMAQAQ LILNMFPPAH GYSLVQGDGT LKLGWKDTSL  360
FTASAWTSLH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5511436710378Protein SCARECROW
5b3h_D3e-5511436710378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052810.0KM405281.1 Jatropha curcas GRAS29 protein (GRAS29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085853.10.0protein SCARECROW
SwissprotA2ZAX53e-54SCR1_ORYSI; Protein SCARECROW 1
SwissprotQ2RB593e-54SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A067JRC90.0A0A067JRC9_JATCU; GRAS29 protein
STRINGXP_002529844.11e-123(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-55GRAS family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]