PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00043.90 | ||||||||
Common Name | JCGZ_22608, LOC105646169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NF-YC | ||||||||
Protein Properties | Length: 272aa MW: 30633.6 Da PI: 5.8695 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.4 | 1.4e-55 | 89 | 193 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw++q +e++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflv Jcr4S00043.90 89 QLQMFWANQmqeVEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 184 89******9777799********************************************************************************* PP NF-YC 94 divprdelk 102 di+prdelk Jcr4S00043.90 185 DIIPRDELK 193 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.06E-34 | 67 | 183 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.4E-37 | 103 | 175 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.6E-21 | 111 | 174 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDQSEQTQQQ QQQQQSQQLP VMGVVAGAAQ MAYTTTPYQT AGMMASGTPA MAVPSSTQAP 60 STYSNSPHQL TYQQAQHFHH QQQQQQQQQL QMFWANQMQE VEQTTDFKNH SLPLARIKKI 120 MKADEDVRMI SAEAPVIFAK ACEMFVLELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF 180 DFLVDIIPRD ELKEEGLGVT KATIPMVGSP ADMPYYYVPP QHPVGPPGMI MGKPVDQAAV 240 YGAQQPRPPV AFMPWPQNQP QQQQPQQQQS DN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 9e-59 | 97 | 189 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 167 | RRTLQKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087361.1 | 0.0 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A067JQF0 | 0.0 | A0A067JQF0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014024m | 1e-151 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-75 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Entrez Gene | 105646169 |
Publications ? help Back to Top | |||
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