PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00043.30 | ||||||||
Common Name | JCGZ_22614, LOC105646251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 28409.9 Da PI: 4.6925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.4 | 2.6e-08 | 133 | 177 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ + L +l+P K++ ae+L+ A +Y+k+Lq Jcr4S00043.30 133 SIAARERRRKITDKTQLLGRLIPGG-----SKMNTAEMLQAAYKYVKYLQ 177 67889******************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.506 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 130 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-11 | 130 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.02E-8 | 130 | 180 | No hit | No description |
SMART | SM00353 | 5.1E-9 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-6 | 133 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSSSFSSSYS DIETAFNQHQ LSLLTGDQFL DYTENNFDFL LNTFVDPFYD SVNFLNYSDN 60 LLLCESPKTY APEDFNLAYP NTKRPKCNNT EDFCCYSYSD YFTQPPTSVQ VNSDDNNGGK 120 KMNMEVRSVS AQSIAARERR RKITDKTQLL GRLIPGGSKM NTAEMLQAAY KYVKYLQAQL 180 GVLRFLFGSS QLKAKDIKEL QILGSASFQE KLYMQEKCLV PNEIALILTN NQDVNSDTSI 240 SDLTLLFNDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087457.2 | 6e-88 | transcription factor bHLH52 | ||||
TrEMBL | A0A067JZW0 | 0.0 | A0A067JZW0_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 4e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105646251 |
Publications ? help Back to Top | |||
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