PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00039.170

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 154aa MW: 17573.5 Da PI: 9.3334

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00039.170	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.1	1.2e-06	11	39	4	34
HHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskap 34 h +ErrRR+ +N+ f +L ++P ++ + Jcr4S00039.170 11 HHILAERRRRELVNQQFVTLSNIIPGLT--K 39 6899*********************972..2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.163	7	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-8	11	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-7	11	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
METQMLLRTP HHILAERRRR ELVNQQFVTL SNIIPGLTKR DRTSLLGEAL RPQPSVDEKF 60 DNNLNHPLPE IEAKVLDQSV LVRIHCEKNK GNLAKVLHEL EKLPLIVVAT NILPFGSCTM 120 DLTVIGQINT EVPIRAKDLV RYLRSALLNF RSEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	19	RTPHHILAERRRR
2	15	20	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087468.1	4e-70	transcription factor bHLH18-like
TrEMBL	A0A061DIU4	3e-40	A0A061DIU4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOX91821	4e-41	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14989	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-30	bHLH family protein