PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00038.120

Common Name

JCGZ_02678, LOC105632586

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 259aa MW: 28566 Da PI: 6.8987

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00038.120	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.1	6.9e-39	47	148	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael Jcr4S00038.120 47 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 141 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 a+++++l Jcr4S00038.120 142 AMVQTQL 148 99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.744	46	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-38	47	145	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:1900150	Biological Process	regulation of defense response to fungus

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAEPQCDATL TDTRRKGIGK RASSMPVESH QSSIGEQPAP VVAAAAPCGA CKFLRRKCIS 60 GCIFAPHFGS DQGAARFAAV HKVFGASNVS KLLLHIPVNR RHEAVVTISY EAQARLSDPV 120 YGCVSTILAL QQQVASLQAE LAMVQTQLIN SRFAMANVLQ NSHHHHHQQQ QQQQQHHHQH 180 DQQVVMLQPA YSNNSSASTN FINVSSFPSN FDLVTADTAP SSHSLLEPLQ LSHQPHEDEE 240 DEEESRIPVI FPDEILHRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-37	43	158	7	119	LOB family transfactor Ramosa2.1
5ly0_B	5e-37	43	158	7	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070397.1	0.0	LOB domain-containing protein 20
Swissprot	Q9SRV3	6e-84	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A067KXG0	0.0	A0A067KXG0_JATCU; Uncharacterized protein
STRING	cassava4.1_026878m	1e-121	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	6e-68	LOB domain-containing protein 20

Link Out ? help Back to Top
Entrez Gene	105632586

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]