PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00030.90
Common NameJCGZ_04340, LOC105633702
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 271aa    MW: 30705.7 Da    PI: 10.2105
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00030.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.7e-10561103593
                    EEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
             B3  35 tltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                    + ++++ s   W +k+   k+s++   +++GW +Fvk ++++  DfvvF+++g++ f   
  Jcr4S00030.90  56 KAVVRS-SKGLWHIKV--GKCSKGlLCFEEGWGDFVKHHDINFEDFVVFEHKGNMFF--D 110
                    445455.5567*****..999999999***********************9998777..3 PP
2B354.42.3e-171762541388
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SSS CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkld.grs 88 
                     + l +p +fa++++++  +s  l+l+++s + W vkl+  r ++++   ++++kGW +F  +n+LkegD+++F+ld +r+
  Jcr4S00030.90 176 GSYLHIPEEFAKSINLV--RSSILILRNSSRKIWPVKLSAiRDSKCKaarVLMKKGWADFYVDNKLKEGDVCLFELDlSRK 254
                    36799*********999..6669***************887444444468*************************984332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1127119IPR015300DNA-binding pseudobarrel domain
CDDcd100174.97E-928115No hitNo description
SuperFamilySSF1019362.55E-1428119IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01430120IPR003340B3 DNA binding domain
PROSITE profilePS508639.10766117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-22155266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20156253IPR015300DNA-binding pseudobarrel domain
CDDcd100178.81E-15161268No hitNo description
SMARTSM010197.7E-6163259IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169164265IPR003340B3 DNA binding domain
PfamPF023622.4E-14177253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPTESLSGKR SQRWSSSMAG IHKLPVRRHF FKVMMGDFRT KLSLPLALRG QLKGEKAVVR  60
SSKGLWHIKV GKCSKGLLCF EEGWGDFVKH HDINFEDFVV FEHKGNMFFD ALVFDSSSCE  120
KEFLISNNSA NNKKKNKEKV NNLHTGESPL EAARSCSPKT PHFITTIEAS NVADAGSYLH  180
IPEEFAKSIN LVRSSILILR NSSRKIWPVK LSAIRDSKCK AARVLMKKGW ADFYVDNKLK  240
EGDVCLFELD LSRKETSRAL IMDVQIFPLL I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071729.10.0B3 domain-containing protein REM8 isoform X2
TrEMBLA0A067L1Q20.0A0A067L1Q2_JATCU; Uncharacterized protein
STRINGcassava4.1_013968m1e-101(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-17B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]