PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00028.70

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HD-ZIP

Protein Properties

Length: 858aa MW: 93867.2 Da PI: 6.3688

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00028.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	8e-21	118	173	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe +F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Jcr4S00028.70 118 KKKYHRHTPHQIQELEVFFKECPHPDEKQRLELSRRLGLESKQIKFWFQNRRTQMK 173 79999************************************************999 PP
2	START	113.8	2.6e-36	323	507	2	165
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 la++a++el+k a+ + p+W+ks + + ++e++++f++ + + +ea r++g+ + ++ lve+l+d++ qW e + +a++++v Jcr4S00028.70 323 LALAAMDELIKIAQIDGPVWMKSLdggkDVLHYEEYTRTFSPCISmkpssFVTEATRETGLIIINSLALVETLMDVN-QWVEAFSslvaRASVIDV 417 6899********************9999*******9988899999************************.************** PP ECTT.......EEEEEEE.EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 85 issg.......galqlmv.aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 issg galq+m ++ +splvp R + f+R+++q+ +g+w++vdvS+d +q+ + ++ +++lpSg+++++++ng +kv+ Jcr4S00028.70 418 ISSGmaagsknGALQVMHgGSFKCISPLVPvRQVRFLRFCKQHAEGVWAVVDVSIDANQESSDVNPFNVCRRLPSGCIMQDMPNGCCKVI 507 ************97258899********************************9997888888****************98 PP
3	START	40.4	7.6e-14	542	587	160	206
CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g +vtwveh +++++++h+l+r +++sg +ga++wvatlqr+ce+ Jcr4S00028.70 542 G-GEVTWVEHSEYDESVVHQLYRTVLSSGGGFGAQRWVATLQRYCEC 587 4.58*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-21	104	175	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.55E-20	104	175	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.929	115	175	IPR001356	Homeobox domain
SMART	SM00389	3.7E-18	117	179	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-18	118	173	IPR001356	Homeobox domain
CDD	cd00086	4.66E-19	118	175	No hit	No description
PROSITE pattern	PS00027	0	150	173	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	35.728	313	590	IPR002913	START domain
SuperFamily	SSF55961	2.06E-23	313	502	No hit	No description
CDD	cd08875	1.76E-98	317	586	No hit	No description
SMART	SM00234	4.1E-21	322	587	IPR002913	START domain
Pfam	PF01852	2.0E-29	323	507	IPR002913	START domain
Pfam	PF01852	3.5E-10	537	587	IPR002913	START domain
SuperFamily	SSF55961	2.06E-23	542	587	No hit	No description
SuperFamily	SSF55961	6.32E-20	615	851	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MGLCCREGRI VSNSFNRGGG GSSNIVVDIV THSTNMHSGA IAQPPLLASS IPKSPALSLS 60 IKGKMDDHGD MGLLGEPFDP SIVGRIKEDG YESRSGSDNL EGASGDDQEA GDHQRRRKKK 120 YHRHTPHQIQ ELEVFFKECP HPDEKQRLEL SRRLGLESKQ IKFWFQNRRT QMKTQLERHE 180 NIILRQENDK LRAENELLKL NMTDPICNSC GGPVVPGPVS FEQQQLRIEN ARLKDELGRV 240 CALANKFLGR PLSSSASPVA PFGSNSKLDL AVGRNGYGVL GNVEAPLPMG LDFNDDITMP 300 LMKPMTSPVT NGVPYDRSMF IDLALAAMDE LIKIAQIDGP VWMKSLDGGK DVLHYEEYTR 360 TFSPCISMKP SSFVTEATRE TGLIIINSLA LVETLMDVNQ WVEAFSSLVA RASVIDVISS 420 GMAAGSKNGA LQVMHGGSFK CISPLVPVRQ VRFLRFCKQH AEGVWAVVDV SIDANQESSD 480 VNPFNVCRRL PSGCIMQDMP NGCCKVILGS FNLHVINYIF DASIPISYAY TDGYMLCPCI 540 TGGEVTWVEH SEYDESVVHQ LYRTVLSSGG GFGAQRWVAT LQRYCECMAI LASPTISGED 600 QTGINLSGKK SMLKLAQRMV DNFCCGVSAS SVRKWDKLLV GNVGENVRIL TRKNVNDPGE 660 PPGVVLSAAT SVWLPVMRQR LFDFLRDERL RCEWDILSHG GLMQEMVHIT KGNSSGNCVS 720 LLRSSAVSPN TNESNMLILQ ETWNDASNSL VVYAPVDIPS MSVVMNGGDS TYVALLPSGF 780 VIVPDDSLRQ GGPNFCNGNL VKRDSDGNDG AGSLLTVGFQ ILVNNLPTAK ITVESVETVN 840 NLISCTIQRI KAALQLNS

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MGLCCREGRI VSNSFNRGGG GSSNIVVDIV THSTNMHSGA IAQPPLLASS IPKSPALSLS  60
IKGKMDDHGD MGLLGEPFDP SIVGRIKEDG YESRSGSDNL EGASGDDQEA GDHQRRRKKK  120
YHRHTPHQIQ ELEVFFKECP HPDEKQRLEL SRRLGLESKQ IKFWFQNRRT QMKTQLERHE  180
NIILRQENDK LRAENELLKL NMTDPICNSC GGPVVPGPVS FEQQQLRIEN ARLKDELGRV  240
CALANKFLGR PLSSSASPVA PFGSNSKLDL AVGRNGYGVL GNVEAPLPMG LDFNDDITMP  300
LMKPMTSPVT NGVPYDRSMF IDLALAAMDE LIKIAQIDGP VWMKSLDGGK DVLHYEEYTR  360
TFSPCISMKP SSFVTEATRE TGLIIINSLA LVETLMDVNQ WVEAFSSLVA RASVIDVISS  420
GMAAGSKNGA LQVMHGGSFK CISPLVPVRQ VRFLRFCKQH AEGVWAVVDV SIDANQESSD  480
VNPFNVCRRL PSGCIMQDMP NGCCKVILGS FNLHVINYIF DASIPISYAY TDGYMLCPCI  540
TGGEVTWVEH SEYDESVVHQ LYRTVLSSGG GFGAQRWVAT LQRYCECMAI LASPTISGED  600
QTGINLSGKK SMLKLAQRMV DNFCCGVSAS SVRKWDKLLV GNVGENVRIL TRKNVNDPGE  660
PPGVVLSAAT SVWLPVMRQR LFDFLRDERL RCEWDILSHG GLMQEMVHIT KGNSSGNCVS  720
LLRSSAVSPN TNESNMLILQ ETWNDASNSL VVYAPVDIPS MSVVMNGGDS TYVALLPSGF  780
VIVPDDSLRQ GGPNFCNGNL VKRDSDGNDG AGSLLTVGFQ ILVNNLPTAK ITVESVETVN  840
NLISCTIQRI KAALQLNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090292.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A067JEK7	0.0	A0A067JEK7_JATCU; Uncharacterized protein
STRING	XP_002510822.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]