PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00028.120
Common NameJCGZ_26147, LOC105648503
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 847aa    MW: 97570.4 Da    PI: 5.8218
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00028.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.42.1e-2776163290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn+YA+ vGFsvrk+  ++sk +g +++r+f+Cskeg+r+++k++  + +++r+etrtgC a++ ++++ dgk++vt++e +HnH++ 
  Jcr4S00028.120  76 FYNKYARLVGFSVRKDWVNRSKVHGLVVSRKFTCSKEGYRRKDKRD-ANVKKHRKETRTGCLAHMIITRQPDGKYQVTHFEAKHNHDVK 163
                     *******************************************999.99999**********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-2576163IPR004330FAR1 DNA binding domain
PfamPF105511.2E-24284378IPR018289MULE transposase domain
PROSITE profilePS5096610.249564600IPR007527Zinc finger, SWIM-type
SMARTSM005759.8E-4575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MSRDEGDLGS PRDEDMDIGI QTSDKLDLNL DQDCQSPNVA QVSGNQYSLC SKDDSVTGGI  60
LKIGTEFESD EHAYTFYNKY ARLVGFSVRK DWVNRSKVHG LVVSRKFTCS KEGYRRKDKR  120
DANVKKHRKE TRTGCLAHMI ITRQPDGKYQ VTHFEAKHNH DVKPNNAQTF QLQEELCVSQ  180
ASKDDFSSNL GMGSNSTLEL MNKRIEVGES LDYLAMNFKN YLQSERTRDM KKGDAGRLLH  240
YFQRQHFENP AFFHAIQVDI DDKISNIFWA DDKMVADYEH FGDVVCLDTT YRISKDIQPF  300
VQFVGLNHHN LAITFAAALL FDDTVESLKW LFTTFIEAMS GKKPKVILID QDAGIVEAIN  360
SVLPETSHHI CVWQMYQNAL KHLNHALKDI ESFSSDFRSC IYDHNDEEDF IHAWEALLEK  420
YDLQQNEWLR WMFREKEKWA VVYGRNTFFV DAKGSHVVED LYNNFRGHLN SDQDALQFFK  480
VFERMVDEQR FKEIQANDEM IRCMPRLIGN VVLLKHASDI YTPKAFEIFQ REYEKSLNFV  540
VSQYSESEIF LEYKVNTFGR SREYTVTFNP SDDTVICSCM KFENVGILCG HALKVLDNRN  600
IKVVPSQYIL KRWTKDARTG RVGETKEFIA QENSKLVAAS RYKELCHRIL AISARAIESE  660
DAFQFASRQL DDVIEGVEKI LAFKTEGVQG MSSSSTAANV SESENPEIFL DERTMEDQDK  720
DNRVARISEK ENAAPDRQQQ KNIIEKCSRK KGLTSAPPPP YTINFVSSPP QPCVSTEAQT  780
HNSVLQGLYQ EVQSMYQQQN SVMNHQDNPN PYQQSNFYSD QHDSPRQTPL LQAMDLDLQH  840
PQPSSFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090300.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067JEL10.0A0A067JEL1_JATCU; Uncharacterized protein
STRINGPOPTR_0012s13550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]