PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S00028.120 | ||||||||
Common Name | JCGZ_26147, LOC105648503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 847aa MW: 97570.4 Da PI: 5.8218 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.4 | 2.1e-27 | 76 | 163 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA+ vGFsvrk+ ++sk +g +++r+f+Cskeg+r+++k++ + +++r+etrtgC a++ ++++ dgk++vt++e +HnH++ Jcr4S00028.120 76 FYNKYARLVGFSVRKDWVNRSKVHGLVVSRKFTCSKEGYRRKDKRD-ANVKKHRKETRTGCLAHMIITRQPDGKYQVTHFEAKHNHDVK 163 *******************************************999.99999**********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.6E-25 | 76 | 163 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-24 | 284 | 378 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.249 | 564 | 600 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.8E-4 | 575 | 602 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 847 aa Download sequence Send to blast |
MSRDEGDLGS PRDEDMDIGI QTSDKLDLNL DQDCQSPNVA QVSGNQYSLC SKDDSVTGGI 60 LKIGTEFESD EHAYTFYNKY ARLVGFSVRK DWVNRSKVHG LVVSRKFTCS KEGYRRKDKR 120 DANVKKHRKE TRTGCLAHMI ITRQPDGKYQ VTHFEAKHNH DVKPNNAQTF QLQEELCVSQ 180 ASKDDFSSNL GMGSNSTLEL MNKRIEVGES LDYLAMNFKN YLQSERTRDM KKGDAGRLLH 240 YFQRQHFENP AFFHAIQVDI DDKISNIFWA DDKMVADYEH FGDVVCLDTT YRISKDIQPF 300 VQFVGLNHHN LAITFAAALL FDDTVESLKW LFTTFIEAMS GKKPKVILID QDAGIVEAIN 360 SVLPETSHHI CVWQMYQNAL KHLNHALKDI ESFSSDFRSC IYDHNDEEDF IHAWEALLEK 420 YDLQQNEWLR WMFREKEKWA VVYGRNTFFV DAKGSHVVED LYNNFRGHLN SDQDALQFFK 480 VFERMVDEQR FKEIQANDEM IRCMPRLIGN VVLLKHASDI YTPKAFEIFQ REYEKSLNFV 540 VSQYSESEIF LEYKVNTFGR SREYTVTFNP SDDTVICSCM KFENVGILCG HALKVLDNRN 600 IKVVPSQYIL KRWTKDARTG RVGETKEFIA QENSKLVAAS RYKELCHRIL AISARAIESE 660 DAFQFASRQL DDVIEGVEKI LAFKTEGVQG MSSSSTAANV SESENPEIFL DERTMEDQDK 720 DNRVARISEK ENAAPDRQQQ KNIIEKCSRK KGLTSAPPPP YTINFVSSPP QPCVSTEAQT 780 HNSVLQGLYQ EVQSMYQQQN SVMNHQDNPN PYQQSNFYSD QHDSPRQTPL LQAMDLDLQH 840 PQPSSFL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090300.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067JEL1 | 0.0 | A0A067JEL1_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0012s13550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-116 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105648503 |
Publications ? help Back to Top | |||
---|---|---|---|
|