PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00025.270
Common NameJCGZ_19069, LOC105643608
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CAMTA
Protein Properties Length: 980aa    MW: 109606 Da    PI: 7.0546
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00025.270genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11795.9e-56201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e k+rwl+++ei++i++n+++++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+een +fqr
  Jcr4S00025.270  20 EEaKHRWLRPSEILEIIQNYQRFKLTPDPPIRPSAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEENDSFQR 114
                     4559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     rcyw+L+ +le+ivlvhy+evk
  Jcr4S00025.270 115 RCYWMLDAKLEHIVLVHYREVK 136
                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.59515141IPR005559CG-1 DNA-binding domain
SMARTSM010765.8E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4921134IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.97E-11438525IPR014756Immunoglobulin E-set
PfamPF127962.1E-7607691IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-14618724IPR020683Ankyrin repeat-containing domain
CDDcd002042.12E-12618721No hitNo description
Gene3DG3DSA:1.25.40.209.9E-15620751IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.831620723IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0017662691IPR002110Ankyrin repeat
PROSITE profilePS5008810.74662694IPR002110Ankyrin repeat
SMARTSM002482700701730IPR002110Ankyrin repeat
SuperFamilySSF525401.57E-8828883IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.45832854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627833862IPR000048IQ motif, EF-hand binding site
PfamPF006120.0043834853IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0024855877IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.78856884IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011859877IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MAETRRYLPN QALDLRQILE EAKHRWLRPS EILEIIQNYQ RFKLTPDPPI RPSAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVREAHEK LKAGSVDVLH CYYAHGEEND SFQRRCYWML  120
DAKLEHIVLV HYREVKEGYR SGVSHLLSPP VAKVDSPQPF SASPFPQTAS PAFTAQTSYA  180
SSQKKAVWND QTLSSELEEV DSRDDPRAES FTGPGYSPVP HNGSLFATEV EGLHVSSQNP  240
AGSFFIGANH STGSSLWTDN PSFSKTAYDV LDKKFYIGQP GGTDFISNKS NSELGGDAPD  300
AVAPADRLTI DIDDQALVGA VPQRLIQEHD FNLIHPQFLN HSSFQTAAST AETDDKSKDG  360
ESANELGELK KLDSFGRWMD KEIGGDYDDS LMASDSGNYW NSVGAENEDR EVSSLSHHMH  420
LDIESLGPSL SQEQLFSIRD FSPDWAYSGS ETKVLIIGIF FRKQEVFPRK PNGDVCLVKF  480
EVTAEVLTDN VIRCHAPLHA TGRVPFYITR RNRLACSEVR EFEFRENPSS IAFLTIRSVQ  540
DKMLHLQVRL AKLLNLGPDR KWLDCSIEGC NKCKLKETLY SMRKGSTDEV TCVETKDNLV  600
QSLLKDRLCE WLIFKVHEGG KGPDVLDDEG QGVIHLTAGL GYDWAVRLVV AASNNPNFRD  660
AQGRTALHWA SFFGREETVI ALVRLGVDPA AVDDPTTAFP GGRIAADLAS SQGHKGIAGY  720
LAEAFLTSHL SSLNIKDVTD SVTATIAAEK ATEDLDQVAI PLNGLVDDQS LKGSLAAVRK  780
SALAAALIQA AYRSYSFNCK QFPKISDDSE VSLDLAALGS LNKDQRSHFE DYLHSAAVKI  840
QQKYRGWKGR KDFLKIRNRI VKIQAHVRGH QIRRQYKKVL WSVSIVEKVI LRWRRKGSGL  900
RGFRAEKITG DAVSETDKTD EYEFLSISRK QKSAGVENAL ARVKSMVRDP AARDQYMRLV  960
AKSENLKMSD EGIRVSEDES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084169.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A067K8380.0A0A067K838_JATCU; Uncharacterized protein
STRINGcassava4.1_023110m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]