PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00021.60

Common Name

JCGZ_07240

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 320aa MW: 36596 Da PI: 8.93

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00021.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.1	3.6e-16	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n++ r vt+ kR++g+ KK +E vLCd++++viif+++ Jcr4S00021.60 10 LITNERSRMVTYQKRKKGLTKKLHEFRVLCDVDACVIIFGPK 51 699*************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	7.98E-20	1	79	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.231	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-17	1	55	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.90E-21	2	59	No hit	No description
PRINTS	PR00404	4.0E-11	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-17	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGRGKLSMKL ITNERSRMVT YQKRKKGLTK KLHEFRVLCD VDACVIIFGP KFSNRPIDVD 60 TCPTDHSEIK KIIDRYKSHG NDRKKSQDLS HFFETRKRKL DDEITKMHRA CLEAKFPTWD 120 NRLNSSALEE LCLLHTVLQS KLETAMSRIL KIKGDNYLMI GEDSKSVNII QGSSSNNNIN 180 NRYNSMASTF ANALQQKCTE LQQPFDHHQV LPFNVNPLNS PMMMMMMMKA NGTDLSQFGA 240 QEADQTAGNM VILNNHNGGI PHPVSYCGEM RQLSLLGSGQ GSIMPNVSSQ MQVPQFSEFC 300 DTNEFEMKNM KRQCLEYFKY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	98	RKKSQDLSHFFETRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020536507.1	0.0	MADS-box protein JOINTLESS-like
TrEMBL	A0A067KPF8	0.0	A0A067KPF8_JATCU; Uncharacterized protein
STRING	XP_002514306.1	1e-99	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-23	M-type_MADS family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]