PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00017.170

Common Name

JCGZ_25906, LOC105648262

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 453aa MW: 51108.7 Da PI: 5.7006

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00017.170	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.1	1.8e-21	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ +++++++ ++ d Jcr4S00017.170 121 KWTDNIVRLLIAIVACVGDDGPFEGveglkrksgilQKKGKWKTVSKMMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRVVENPALMD 215 7************888777764334555666788********************************************5699999888887 PP trihelix 84 ql 85 ++ Jcr4S00017.170 216 SM 217 77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-18	119	243	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MESSGLGGXX XXXGGLLDLE SPIHRQQQTQ LGNPSLAHQH HMNLIGGLAH DHHSIGLMEV 60 KGSTPKGYST NFGKGKAVSP FSATNNGNGS EDDEPSFMED GNGESSSAAK GKNGSTWQRM 120 KWTDNIVRLL IAIVACVGDD GPFEGVEGLK RKSGILQKKG KWKTVSKMMI SKGCHVSPQQ 180 CEDKFNDLNK RYKRLNEILG RGTSCRVVEN PALMDSMPLS DKAKDDVRKI LSSKHLFYKE 240 MCAYHNGQRI PNCQDLDLQG CLSPLERCSK DNNGSEEEEA EGRDDSDDDD DESDNGDDNN 300 ANEDVVRMDK YSERNKVNEE DARLWSQSGG LIGFEVEMAA IFQDPAVSLW EKKEWIKKQK 360 LQLLEQRVSI QSQAFELEKQ RFKWLRYCSK KDREFETSRL ENERLRLENE QSILQLRQKQ 420 LGMDFRSSET SREPTSLGID RLQGRDQIDL GRH

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MESSGLGGXX XXXGGLLDLE SPIHRQQQTQ LGNPSLAHQH HMNLIGGLAH DHHSIGLMEV  60
KGSTPKGYST NFGKGKAVSP FSATNNGNGS EDDEPSFMED GNGESSSAAK GKNGSTWQRM  120
KWTDNIVRLL IAIVACVGDD GPFEGVEGLK RKSGILQKKG KWKTVSKMMI SKGCHVSPQQ  180
CEDKFNDLNK RYKRLNEILG RGTSCRVVEN PALMDSMPLS DKAKDDVRKI LSSKHLFYKE  240
MCAYHNGQRI PNCQDLDLQG CLSPLERCSK DNNGSEEEEA EGRDDSDDDD DESDNGDDNN  300
ANEDVVRMDK YSERNKVNEE DARLWSQSGG LIGFEVEMAA IFQDPAVSLW EKKEWIKKQK  360
LQLLEQRVSI QSQAFELEKQ RFKWLRYCSK KDREFETSRL ENERLRLENE QSILQLRQKQ  420
LGMDFRSSET SREPTSLGID RLQGRDQIDL GRH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089977.1	0.0	uncharacterized protein LOC105648262
Refseq	XP_012089978.1	0.0	uncharacterized protein LOC105648262
TrEMBL	A0A067JQ02	0.0	A0A067JQ02_JATCU; Uncharacterized protein
STRING	XP_002513474.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10546	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-67	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	105648262

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]