PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00014.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 312aa    MW: 35181.1 Da    PI: 6.6314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00014.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
    Jcr4S00014.40 23 RGPWTVEEDFKLINYITTHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding49.59.5e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
    Jcr4S00014.40  76 RGNITLEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6191870IPR017930Myb domain
SuperFamilySSF466898.27E-3121117IPR009057Homeodomain-like
SMARTSM007172.4E-152272IPR001005SANT/Myb domain
PfamPF002493.4E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-232477IPR009057Homeodomain-like
CDDcd001672.06E-112570No hitNo description
PROSITE profilePS5129422.70771125IPR017930Myb domain
SMARTSM007172.6E-1475123IPR001005SANT/Myb domain
PfamPF002491.9E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2378124IPR009057Homeodomain-like
CDDcd001671.96E-1080119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSPSSSSTTT GTQSEEEMGD LRRGPWTVEE DFKLINYITT HGEGRWNSLA RCAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LEEQLMILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNSKQFKDT MRYLWMPRLI ERIQAASAAN ATATSTTSAA PAIADPAHHN  180
LTEMGTGQWV MGQGNGLVGN EQFGITRYTT PESSSTAASS DSFGTQVSPV SVFEQTIITV  240
LLSTVNHNSN PDYFQSAQVG YSESMISPSG YFNQALDFQA PEQNTNNNQL WMDGGDITDN  300
LWNVEDIWFN NM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346630.0KM034663.1 Jatropha curcas clone JcMYB043 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084138.10.0transcription factor MYB108
SwissprotQ10MB41e-90MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A067K6S10.0A0A067K6S1_JATCU; MYB family protein
STRINGPOPTR_0008s10080.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.13e-88myb domain protein 108
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]