PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00011.30

Common Name

GRAS20, JCGZ_18469

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 536aa MW: 59900 Da PI: 5.4622

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00011.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	461.1	6.5e-141	166	536	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l+++L++cA+avs++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arla+s+s++y+al+++e + ++ l+++++++ev+P++kf+++ Jcr4S00011.30 166 LKHVLIACAKAVSDNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYRALKCKEPA---CDDLLSYMHILYEVCPYFKFGYM 258 689****************************************************************9...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+Ae ++vpfef++ +a + +++ Jcr4S00011.30 259 SANGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVGKRLSKLAELVKVPFEFHA-AAMSGCEVQ 353 *************************************************998899999********************.89999 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +e+L v+pgEalaVn+++ lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpre++eri+vE Jcr4S00011.30 354 VENLGVRPGEALAVNFAFVLHHMPDESVSTKNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYMAMFESIDVTLPREHKERINVE 449 ******************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++l+r++vn++ace++er+erhe l+kWr+r+++aGF p+pls+ +++++k+ll+++ + yr++e++g+l+lgW++r Lv+ +aW+ Jcr4S00011.30 450 QHCLARDVVNIIACEETERVERHELLGKWRSRFRMAGFAPYPLSSLVNATIKTLLENYCD-KYRLQERDGALYLGWMNRDLVASCAWK 536 ******************************************************95.5***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.527	140	517	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-138	166	536	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009640	Biological Process	photomorphogenesis
GO:0005737	Cellular Component	cytoplasm
GO:0004871	Molecular Function	signal transducer activity

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MSSRLYYQPM PEIEAYYMPQ FPTLDKQLCY GGSSQGIHSS ILNSCEHNCT QESSLANGSF 60 AVYNSPSTLS FSPNGSPVSQ QESQSYPSDP HHSPDHNYGS PISGSCITDD VNDFRNKLRE 120 LETVMLGPDS DIIDSIESTF QNGTSIESPE MESLRQIVEA ISRGDLKHVL IACAKAVSDN 180 DLLMAQWLMD ELRQMVSVSG EPIQRLGAYM LEGLVARLAS SGSSIYRALK CKEPACDDLL 240 SYMHILYEVC PYFKFGYMSA NGAIAEAMKD ENRVHIIDFQ IGQGSQWITL IQAFAARPGG 300 PPHIRITGID DSTSAYARGG GLNIVGKRLS KLAELVKVPF EFHAAAMSGC EVQVENLGVR 360 PGEALAVNFA FVLHHMPDES VSTKNHRDRL LRLVKSLSPK VVTLVEQESN TNTAAFFPRF 420 LETLDYYMAM FESIDVTLPR EHKERINVEQ HCLARDVVNI IACEETERVE RHELLGKWRS 480 RFRMAGFAPY PLSSLVNATI KTLLENYCDK YRLQERDGAL YLGWMNRDLV ASCAWK

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MSSRLYYQPM PEIEAYYMPQ FPTLDKQLCY GGSSQGIHSS ILNSCEHNCT QESSLANGSF  60
AVYNSPSTLS FSPNGSPVSQ QESQSYPSDP HHSPDHNYGS PISGSCITDD VNDFRNKLRE  120
LETVMLGPDS DIIDSIESTF QNGTSIESPE MESLRQIVEA ISRGDLKHVL IACAKAVSDN  180
DLLMAQWLMD ELRQMVSVSG EPIQRLGAYM LEGLVARLAS SGSSIYRALK CKEPACDDLL  240
SYMHILYEVC PYFKFGYMSA NGAIAEAMKD ENRVHIIDFQ IGQGSQWITL IQAFAARPGG  300
PPHIRITGID DSTSAYARGG GLNIVGKRLS KLAELVKVPF EFHAAAMSGC EVQVENLGVR  360
PGEALAVNFA FVLHHMPDES VSTKNHRDRL LRLVKSLSPK VVTLVEQESN TNTAAFFPRF  420
LETLDYYMAM FESIDVTLPR EHKERINVEQ HCLARDVVNI IACEETERVE RHELLGKWRS  480
RFRMAGFAPY PLSSLVNATI KTLLENYCDK YRLQERDGAL YLGWMNRDLV ASCAWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-61	170	536	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405264	0.0	KM405264.1 Jatropha curcas GRAS20 protein (GRAS20) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012081428.1	0.0	scarecrow-like transcription factor PAT1
Refseq	XP_020537945.1	0.0	scarecrow-like transcription factor PAT1
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A067KCD6	0.0	A0A067KCD6_JATCU; GRAS20 protein
STRING	cassava4.1_004951m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1653	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]