PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00011.20
Common NameJCGZ_18468, WRKY01
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 438aa    MW: 48081 Da    PI: 7.2806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00011.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30108165260
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++ers+ d+++ +i+Y g+H+h+k
  Jcr4S00011.20 108 EDGYHWRKYGQKLVKGNEFIRSYYKCTHPNCQVKKQLERSH-DGQIADIVYFGQHDHPK 165
                    8****************************************.***************85 PP
2WRKY106.41.5e-33276334159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpkvv++ Yeg+H+h+
  Jcr4S00011.20 276 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVITSYEGQHDHN 334
                    58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.009102166IPR003657WRKY domain
SuperFamilySSF1182907.85E-25103166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-27103166IPR003657WRKY domain
SMARTSM007742.9E-34107165IPR003657WRKY domain
PfamPF031061.7E-23108164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-36262336IPR003657WRKY domain
SuperFamilySSF1182902.09E-29268336IPR003657WRKY domain
PROSITE profilePS5081135.714271336IPR003657WRKY domain
SMARTSM007742.2E-38276335IPR003657WRKY domain
PfamPF031064.1E-26277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVSSGEDLDK FASDESEKRL HPDKSHTVQQ IDGSGIHKSE NQEEATTVTP EKSQQDHNAG  60
IHISQLDKEG SISSIIPHKV PQTAATSSSA LRSGQEGKTP IIREKVLEDG YHWRKYGQKL  120
VKGNEFIRSY YKCTHPNCQV KKQLERSHDG QIADIVYFGQ HDHPKPELNP PLAVGFVLSV  180
VDEKADKPLS TGTEEDRASH LLKSKSTSRI SVATSSDDVK GVPSESNKIQ DEVDIDDEPH  240
SKRQKKGNRS VEPTSLDKLT NEPRLVVQTL SEVDIVNDGY RWRKYGQKLV KGNPNPRSYY  300
RCSSPGCPVK KHVERASHDP KVVITSYEGQ HDHNMPPSRT VTHNATALDI YTTAIHGGES  360
GAKSGESDGF VHNSSGPNGN LNGQLNVSGS DMVAHSSSGH ARKSNKLQNG KSSDTKGTDS  420
VVKDTVPEGH DQMKNVDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-37106337275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700130.0KC470013.1 Jatropha curcas WRKY transcription factor 01 (WRKY01) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081426.10.0WRKY transcription factor 1
SwissprotQ9SI371e-92WRKY1_ARATH; WRKY transcription factor 1
TrEMBLM9TGC20.0M9TGC2_JATCU; WRKY transcription factor 01.1
STRINGXP_002533869.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-99zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  5. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]