PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00011.180
Common NameJCGZ_14169, LOC105642758
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 439aa    MW: 50105.1 Da    PI: 6.7336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00011.180genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.71.8e-31122225199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ + 
  Jcr4S00011.180 122 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEWKH 216
                     89****************************66677899*************************************************66466666 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     +l++ ++r+
  Jcr4S00011.180 217 RLYIDWRRR 225
                     689998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-42114231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-30119226IPR015300DNA-binding pseudobarrel domain
CDDcd100178.65E-26120220No hitNo description
PROSITE profilePS5086314.466122224IPR003340B3 DNA binding domain
PfamPF023626.7E-29122225IPR003340B3 DNA binding domain
SMARTSM010197.9E-23122226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNFVEQERGY CDKGEQGPEE EEEEEEEEEE EVTMTSKLPF PSPSSSSSSS TKYRNFLPEN  60
QNLWLGSSNS QQDYKNQEPS LNFENKLELM DLSLGNDNGT VNTSSGGGGS TGHESIEREH  120
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKP WRFRYSYWNS  180
SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGEWKHRLYI DWRRRPNAPD PTSFTHLELQ  240
NQLHFPQSVR WGRLYSLPQP LSSMPRPYEQ HHHQFQNLGY SIHQQPYHHQ YHHNYHHHHH  300
HHHQQPQYYL RPQGGALQIG ALLHNQQEGG DHQPQMVIDS VPVVHGRSVG KRLRLFGVNM  360
ECSTQDDQSS PSSSSVTIPT MMGSFSPHFT AANSSSSVPP LQSRVVVASP SSASTPINTQ  420
AHDQFPKKGK TSLSFDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-641172283116B3 domain-containing transcription factor NGA1
5os9_B6e-641172283116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083081.10.0B3 domain-containing transcription factor NGA1
RefseqXP_020538569.10.0B3 domain-containing transcription factor NGA1
RefseqXP_020538570.10.0B3 domain-containing transcription factor NGA1
RefseqXP_020538571.10.0B3 domain-containing transcription factor NGA1
TrEMBLA0A067K0270.0A0A067K027_JATCU; Uncharacterized protein
STRINGcassava4.1_008697m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-75B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]