PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00007.210 | ||||||||
Common Name | JCGZ_02073, LOC105631885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 752aa MW: 86925.5 Da PI: 8.4234 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.3 | 3.3e-20 | 35 | 109 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA++vGF++r+ + ++s+++g++ +r+fvC keg++ + +rtgC a ++v+++++gkw++++++++HnHel Jcr4S00007.210 35 QFYGAYATRVGFRIRTGQLYRSRTDGTVSSRRFVCAKEGFQLN--------------SRTGCPAFIRVQRRDSGKWVIDQIHKDHNHEL 109 6***************************************876..............589***************************98 PP | |||||||
2 | FAR1 | 67.9 | 2.6e-21 | 189 | 263 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnH+l Jcr4S00007.210 189 QFYQMYADSAGFRIRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQESGTWMVDRLQKDHNHDL 263 6***************************************999..............4899**************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-16 | 35 | 109 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 3.5E-17 | 189 | 263 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.6E-29 | 364 | 456 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.693 | 638 | 674 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.0E-7 | 649 | 676 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 2.4E-7 | 650 | 671 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MIRVNNSRIN GEDEGESRLE PCMGLEFVSA DNARQFYGAY ATRVGFRIRT GQLYRSRTDG 60 TVSSRRFVCA KEGFQLNSRT GCPAFIRVQR RDSGKWVIDQ IHKDHNHELG LEDESHPPIL 120 QKRAPKATKS SAGVSQRPKF NLIENIDDVH PCTSGVISVK RLKRGGDGGQ FGAEPYAGLA 180 FNSADEAYQF YQMYADSAGF RIRIGQLFRS KNDGSITSRR FVCSKEGFQH PSRVGCGAFM 240 RIKRQESGTW MVDRLQKDHN HDLELQSGTQ KKICNTSKKF IDDINDGLDL SDLDKINYGG 300 PIRRNRVNNI GSDWYRLLLD YFQTRQAEDT AFFYSVEVDN GSCMSMFWAD GRSRFSCSQF 360 GDAVVFDTSY RKSNYQVPFA TFVGVNHHKL PVLLACALIA DESEESFTWL FQTWLRAMSG 420 CRPKSIIADQ DMAIQHAIAK VFPMTHHRFS TWQIRAKERE NLRSMTDEFK YEYEKCIYQS 480 QTSVEFNTMW SALINKYGLK ENPWLKEMYE KRESWVPLYL RGKFCAGVPI NESLESFFGT 540 VSIAQTPITE FISRYEQGLA RRREEERKED FNCYNLQVFL QTKEPVEEQC RRVYTLTVFK 600 ILQNELLQCY NYLGIKTYEE GTISRYSVRR CGNEIEKHAV TFSASNLNVC CSCLMFEFEG 660 ILCRHILRVF NLLDIREIPS RYILHRWTRN AEYGTVQDIE SGVSAQELKS LIVWSLRETA 720 CKYIEAGTTS LEKFKLAHEI MREGGIKLRW QR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012069481.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 isoform X2 | ||||
Swissprot | Q9M8J3 | 0.0 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A067L6E7 | 0.0 | A0A067L6E7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_001903m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 0.0 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Entrez Gene | 105631885 |
Publications ? help Back to Top | |||
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