PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00005.370

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YA

Protein Properties

Length: 249aa MW: 27442.4 Da PI: 10.4455

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00005.370	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	86.7	3.3e-27	75	155	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekk........................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++k l ++ +pylheSRh hAl+R RgsgGrF Jcr4S00005.370 75 DGPIYVNAKQYHGILRRRQSRAKLEAQNKlvksrkmiigrvvlifmhqlpitkL-LHGLQPYLHESRHLHALNRVRGSGGRF 155 57**********************************************9975.7999********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.8E-27	73	158	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	31.873	74	158	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-26	77	155	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	79	99	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MKPVFLFSTP EIALNPSQVD NCYSMARAPF PHADNYFGGL FTPYGPQTII QPQLGSQMVG 60 MTSARVPLPL DLADDGPIYV NAKQYHGILR RRQSRAKLEA QNKLVKSRKM IIGRVVLIFM 120 HQLPITKLLH GLQPYLHESR HLHALNRVRG SGGRFLSTKR SQQPDPTSTS CTHGVSDTIS 180 FHQKNEMSER EMCVSRAGQS GASNTTRSDI TSVSSSDLIF RQPDRRFSGM STHIGGGMQT 240 SGGLICSGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-16	77	168	4	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077008.1	1e-160	nuclear transcription factor Y subunit A-3
Refseq	XP_012077009.1	1e-160	nuclear transcription factor Y subunit A-3
Refseq	XP_012077010.1	1e-160	nuclear transcription factor Y subunit A-3
Refseq	XP_020536550.1	1e-160	nuclear transcription factor Y subunit A-3
Refseq	XP_020536552.1	1e-160	nuclear transcription factor Y subunit A-3
Refseq	XP_020536553.1	1e-160	nuclear transcription factor Y subunit A-3
TrEMBL	A0A067KPY7	1e-160	A0A067KPY7_JATCU; Uncharacterized protein
STRING	cassava4.1_011576m	1e-111	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6949	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.2	3e-43	nuclear factor Y, subunit A3