PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00005.110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HSF | ||||||||
Protein Properties | Length: 473aa MW: 52517.6 Da PI: 4.5798 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.7 | 1e-34 | 141 | 232 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++e++ed+e+++++sws+n +sf+v+d +e++k++LpkyFkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F+ gkk+ll++ Jcr4S00005.110 141 FLRKTFEMVEDPETDSTVSWSKNRDSFIVWDAHELSKHLLPKYFKHCNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFQGGKKHLLKN 226 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+++ Jcr4S00005.110 227 IRRRSR 232 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 8.71E-34 | 137 | 230 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-57 | 137 | 230 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.8E-37 | 137 | 230 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-30 | 141 | 230 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 141 | 164 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 179 | 191 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 180 | 204 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 192 | 204 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MLAPDFESCG DGCGGGGGGG GGGLSPSLSA TFMPKPTQPE EEEPLQSISV KEEEMPVAGS 60 GGSDGGPSSS ASSSLMTTEI ERKAETIKVV TIKEEAGEEY DAGAIGDVDN GVNNNGSSSS 120 SSSVDLPKPM EGLHETGPPP FLRKTFEMVE DPETDSTVSW SKNRDSFIVW DAHELSKHLL 180 PKYFKHCNFS SFIRQLNTYG FRKVDPDRWE FANEGFQGGK KHLLKNIRRR SRYNKQQQGA 240 VTSDDSAKLS LEVQLEKLKN DQDLLKVEIF KLRQQQENSE NQLSTVEQRV RVAECKQLQM 300 FVFLAKAAKK GSFIQNLIQK RKRQRELDAA EFGKKRRLLD SQVRARLLDA VDANQSVICR 360 NQAQEQLATM QTELTEILKE DTETNTMSKL FETPISDEFC SPAIATCGTN TQESVYHLMS 420 EILLDDDTVP EVLVDEDLDV NDSKFYLELE DLTGKPRSWD GYVTELVQQA GCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 116 | 230 | 4 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 116 | 230 | 4 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 116 | 230 | 4 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 319 | 324 | KRKRQR |
2 | 320 | 336 | RKRQRELDAAEFGKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076960.1 | 0.0 | heat stress transcription factor A-2 | ||||
TrEMBL | A0A067KPW6 | 0.0 | A0A067KPW6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_005870m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 3e-85 | heat shock transcription factor A2 |