PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00002.110

Common Name

JCGZ_08023, LOC105635162

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 705aa MW: 80485.7 Da PI: 6.9721

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00002.110	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96.8	2.4e-30	81	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r+e + + +++r+r++tr+gCk +++vkk+++gkw vt+l +eHnH+l+p Jcr4S00002.110 81 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGNAN--RSKRQRTVTRVGCKSQMTVKKQSSGKWAVTRLIKEHNHDLVP 168 9***************************************9888..99***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-27	81	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-30	254	345	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MDIVALNVME FDDMGGSGSQ DDVGALDLEH SDDFEIEYRD NNHNLLEGPS TVSHFSTSNG 60 DPNLEPYEGM EFDSEQAARI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QIVCSREGFR 120 REGNANRSKR QRTVTRVGCK SQMTVKKQSS GKWAVTRLIK EHNHDLVPPD KVHCLRSHRH 180 VSGPARSLID TLQAAGMGPS GVMSVLIKES GGINNTADPG FFYAVQGDFE NSSGNIFWAD 240 ASSRRNYTFF GDTVTFDTTY RTNRYRVPFA PFTGWNHHGQ PVLFGCALLL SESESSFVWL 300 FETWLAAMSS RHPISITTDQ DRIIRAAVSQ VFPGTRNRFC KWNIFREAQE KLSDVYRSHP 360 AFEVEFQRCI NMTETIDEFE SCWESLIQRY DLGDSEWLQS MYSSRQQWVP VYLMDTFFGE 420 MSVMQGSDTI NSYFDGYINA STNIQVLIKQ HEKAIATRYE KEVKADYDTM NIPPVLRTPS 480 PMEKQAANLY TRKIFMKFQE ELVETLAYPA TVIDDVGPSI TYRVAKFGED HKAHFVRHIL 540 AVFRVTNVLT LPSHYVLKRW TRNAKSQVVL DEHALWLPSN SQESFAARCQ NLSHKVIKYI 600 EEGSESIQVY NVAMNALHEA TRKVAIAKKQ GPVSMQNSQV NASQQLQLCC LDQDKKIQEL 660 TAELEHASQQ CEAYRSKLLA VLKDMEEQKL KISVKVQNVR LNLKD

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MDIVALNVME FDDMGGSGSQ DDVGALDLEH SDDFEIEYRD NNHNLLEGPS TVSHFSTSNG  60
DPNLEPYEGM EFDSEQAARI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QIVCSREGFR  120
REGNANRSKR QRTVTRVGCK SQMTVKKQSS GKWAVTRLIK EHNHDLVPPD KVHCLRSHRH  180
VSGPARSLID TLQAAGMGPS GVMSVLIKES GGINNTADPG FFYAVQGDFE NSSGNIFWAD  240
ASSRRNYTFF GDTVTFDTTY RTNRYRVPFA PFTGWNHHGQ PVLFGCALLL SESESSFVWL  300
FETWLAAMSS RHPISITTDQ DRIIRAAVSQ VFPGTRNRFC KWNIFREAQE KLSDVYRSHP  360
AFEVEFQRCI NMTETIDEFE SCWESLIQRY DLGDSEWLQS MYSSRQQWVP VYLMDTFFGE  420
MSVMQGSDTI NSYFDGYINA STNIQVLIKQ HEKAIATRYE KEVKADYDTM NIPPVLRTPS  480
PMEKQAANLY TRKIFMKFQE ELVETLAYPA TVIDDVGPSI TYRVAKFGED HKAHFVRHIL  540
AVFRVTNVLT LPSHYVLKRW TRNAKSQVVL DEHALWLPSN SQESFAARCQ NLSHKVIKYI  600
EEGSESIQVY NVAMNALHEA TRKVAIAKKQ GPVSMQNSQV NASQQLQLCC LDQDKKIQEL  660
TAELEHASQQ CEAYRSKLLA VLKDMEEQKL KISVKVQNVR LNLKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073554.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067KKW5	0.0	A0A067KKW5_JATCU; Uncharacterized protein
STRING	EMJ10105	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Entrez Gene	105635162

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]