PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc050656.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 167aa    MW: 18697.9 Da    PI: 9.9072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc050656.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.6e-16346146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                             rg+++++E+  ++d+++  G++ W+ Ia++++ gRt++++k++w++
  Itr_sc050656.1_g00001.1  3 RGSFSEQEERTIIDVHRIIGNR-WAQIAKHLP-GRTDNEVKNFWNS 46
                             899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.201152IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-21153IPR009057Homeodomain-like
SMARTSM007172.2E-14250IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-14363IPR009057Homeodomain-like
PfamPF002499.4E-15346IPR001005SANT/Myb domain
CDDcd001679.59E-12545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
LRRGSFSEQE ERTIIDVHRI IGNRWAQIAK HLPGRTDNEV KNFWNSCIKK KLIAQGLDPN  60
THNLISPSQA KTTKHNNSHT RHQKSSPSAF TIETCSSSHK DVVPMEIKAT LAAAFPPNTT  120
PPNDKLLYHK NTITLSHERN NNPVMDYASC SSMEITSNHN NLSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1615257108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150556.13e-85PREDICTED: trichome differentiation protein GL1-like isoform X1
TrEMBLA0A2G2VS577e-53A0A2G2VS57_CAPBA; Transcription factor MYB26
STRINGSolyc10g005240.2.11e-49(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-38myb domain protein 67