PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc048860.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 82aa    MW: 9117.16 Da    PI: 8.2237
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc048860.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS37.24.3e-12171298365
                     GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdr 365
                              vac  +e++er+et+++W++rl++ GF+p+++++++ +++++llr++  +g+++     e+s+ ++l Wk+ 
  Itr_sc048860.1_g00001.1   1 VACPPSESVERRETAARWSHRLHAGGFSPASYGDEVCDDVRALLRRYR-EGWSMGqcsgESSAGIFLSWKNS 71 
                              8999*******************************************9.77777656668899999***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.5E-9171IPR005202Transcription factor GRAS
PROSITE profilePS5098510.992157IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
VACPPSESVE RRETAARWSH RLHAGGFSPA SYGDEVCDDV RALLRRYREG WSMGQCSGES  60
SAGIFLSWKN SRWCGLVCGS RH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-21170395463Protein SHORT-ROOT
5b3h_B7e-21170341409Protein SHORT-ROOT
5b3h_E7e-21170341409Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195167.17e-38PREDICTED: protein SHORT-ROOT-like
SwissprotA2YN562e-22SHR1_ORYSI; Protein SHORT-ROOT 1
SwissprotQ8H2X82e-22SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A3Q7FD178e-32A0A3Q7FD17_SOLLC; Uncharacterized protein
TrEMBLA0A438FBJ08e-32A0A438FBJ0_VITVI; Protein short-root
TrEMBLA8R3J08e-32A8R3J0_IPONI; Putative SHORT-ROOT protein
STRINGSolyc02g092370.1.11e-32(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20312464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.15e-23GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]