PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc048482.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 179aa MW: 20877.1 Da PI: 7.1963 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 155.5 | 4.8e-48 | 1 | 178 | 170 | 346 |
GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesF 253 e+++vpfefn+ +ak++e++++++L++++gE+l+Vn+ +ql +lld++v ++s +rd+vLkl+ +l P+v+++ ++ +ns+ F Itr_sc048482.1_g00001.1 1 EKFNVPFEFNA-IAKQWETITVDDLKINEGEVLVVNCLYQLRKLLDDTVVVNSlsPRDTVLKLIHKLHPDVFIHGILNSACNSPLF 85 589********.7************************************999998******************************* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 rf al++ysa+fd+le+++pre +er+ +E ++g++++n++ace +er+er et++ W++r ++aGF ++pl+ +++k + Itr_sc048482.1_g00001.1 86 TSRFRAALSHYSAVFDMLEVTIPREVHERMLIESYIFGQQAMNAIACEDTERVERPETYKMWQARNTRAGFLQLPLNREIVKMSMH 171 ***********************************************************************************999 PP GRAS 340 llrkvks 346 l+++++ Itr_sc048482.1_g00001.1 172 TLKRYHK 178 9999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 29.032 | 1 | 179 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-45 | 1 | 178 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
EKFNVPFEFN AIAKQWETIT VDDLKINEGE VLVVNCLYQL RKLLDDTVVV NSLSPRDTVL 60 KLIHKLHPDV FIHGILNSAC NSPLFTSRFR AALSHYSAVF DMLEVTIPRE VHERMLIESY 120 IFGQQAMNAI ACEDTERVER PETYKMWQAR NTRAGFLQLP LNREIVKMSM HTLKRYHKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-14 | 3 | 162 | 174 | 329 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171942.1 | 1e-117 | PREDICTED: scarecrow-like protein 14 isoform X3 | ||||
Swissprot | P0C883 | 3e-63 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A0V0HMR9 | 6e-80 | A0A0V0HMR9_SOLCH; Putative ovule protein (Fragment) | ||||
TrEMBL | A0A1S4D655 | 2e-78 | A0A1S4D655_TOBAC; scarecrow-like protein 14 | ||||
STRING | XP_009611175.1 | 3e-79 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-65 | GRAS family protein |