PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc044528.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 129aa MW: 14672.7 Da PI: 9.8979 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.7 | 2.2e-19 | 10 | 95 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Yn+YA ++ Fsvr+ k+++s ++ ++++f+Csk+g++++ ++ + +++ rtgC a ++ ++ +g w vtk ++ HnHel Itr_sc044528.1_g00001.1 10 VYNDYAFRLDFSVRMGKQRYSAGIKTLKMKEFNCSKSGFKRSLRNG----SYSKVDVRTGCCAFVQFDLDGNGMWTVTKHQKLHNHEL 93 7***************************************998776....8999********************************** PP FAR1 90 ap 91 +p Itr_sc044528.1_g00001.1 94 VP 95 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-16 | 10 | 95 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MSSIDEAYEV YNDYAFRLDF SVRMGKQRYS AGIKTLKMKE FNCSKSGFKR SLRNGSYSKV 60 DVRTGCCAFV QFDLDGNGMW TVTKHQKLHN HELVPTTKSY LLQSHRSVST NHLSYLKDLK 120 KSGVSVADG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019155211.1 | 1e-60 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019171965.1 | 1e-60 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019192823.1 | 3e-62 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14143 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 5e-14 | FAR1-related sequence 12 |