PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc040924.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 188aa MW: 20901.6 Da PI: 10.3943 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.1 | 4.5e-21 | 18 | 104 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Yn+YA +vGFsvrk k++++ +++++++tf Csk +++++++ + ++ rtgC a ++ + +g+w vtk e+ HnH Itr_sc040924.1_g00001.1 18 LYNDYAFRVGFSVRKGKQRYQGSTKNVKMKTFLCSKASSKSKKNSG--VKGYSKIDLRTGCGAYIQFDVDGNGVWTVTKHEKAHNH 101 7************************************999998777..78889999****************************** PP FAR1 88 ela 90 +l+ Itr_sc040924.1_g00001.1 102 TLS 104 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-17 | 18 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
DQDLVGIVVS NGDEAYELYN DYAFRVGFSV RKGKQRYQGS TKNVKMKTFL CSKASSKSKK 60 NSGVKGYSKI DLRTGCGAYI QFDVDGNGVW TVTKHEKAHN HTLSTKDKSH LLRSHRRVGN 120 NQLSYLRDLK KSGVALADGI RFLKHKSGGS PLVGFTNRDA YNSLASDSLK SLDGTDSNSL 180 IEIFRRMQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152449.1 | 1e-104 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019164370.1 | 1e-103 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019179493.1 | 1e-102 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14143 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-14 | FAR1-related sequence 5 |