PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc038903.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 189aa    MW: 21000.5 Da    PI: 4.9886
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc038903.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183482355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++g
  Itr_sc038903.1_g00001.1 34 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTPEMAARAHDVAALSIKG 82
                             9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-313391IPR001471AP2/ERF domain
SMARTSM003802.3E-363396IPR001471AP2/ERF domain
PROSITE profilePS5103223.1033390IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-213391IPR016177DNA-binding domain
PRINTSPR003673.1E-103445IPR001471AP2/ERF domain
CDDcd000183.96E-303492No hitNo description
PfamPF008472.1E-123482IPR001471AP2/ERF domain
PRINTSPR003673.1E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAEAEAPCSE PSRRPLSSKR PNRARDERRA AVTYRGVRMR SWGKWVSEIR EPRKKSRIWL  60
GTYSTPEMAA RAHDVAALSI KGTSAILNFP HLTDWLPRPA SLHPRDVQAA AAKAAAMEDL  120
NSGACSSSSP SQEEEEELAE IIELPTLNGS FESSSELKLV DSSEWWVLDD EFCGYFVDHQ  180
VGEGESVIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1934911573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198484.11e-78PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2R6QFK55e-61A0A2R6QFK5_ACTCH; Dehydration-responsive element-binding protein
STRINGXP_009617333.13e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]