PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc038300.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 19799.5 Da PI: 10.155 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.1 | 3.2e-09 | 2 | 72 | 31 | 91 |
FAR1 31 rtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 r +vCs++g + ++ + k+rr++ ++ + C ak+ ++++++g+++v+ +e++H+H+l++ Itr_sc038300.1_g00001.1 2 RYLVCSRQGVKGGVSRPppgvngddggKAKQRRRQISNWVRCLAKIFLRRDNTGEFVVSIFEEKHTHPLCS 72 5689******9999988999******9999999************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-6 | 3 | 71 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MRYLVCSRQG VKGGVSRPPP GVNGDDGGKA KQRRRQISNW VRCLAKIFLR RDNTGEFVVS 60 IFEEKHTHPL CSESSRQFMR INRSLDSTQQ AFIASCLKAN IGTSQSFRLC KELMGTYGNI 120 GATSVDFHNF KRDLQSYVGR DEENRLALLF CADPVARANF LRFGDVISFD APTART |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167553.1 | 8e-65 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 2e-06 | FAR1 family protein |