PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc035183.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 366aa    MW: 40581.7 Da    PI: 4.2311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc035183.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.25e-1781412128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya..tgkrknra....... 77 
                              p G+ F+P d +lv ++L + v+g+++++   i+e di+   ePw+L  ++  +e+ +yf +k +kk +  t +r +r+       
  Itr_sc035183.1_g00001.1   8 PLGLFFQPFDYDLV-RFLFEFVTGTNNSE-GLIHEEDIFGDkEPWELI-RYGPSENMVYFLTKLKKKGKlmTARRVERTvgkkvkg 90 
                              7899**********.99*******99888.89*****986549****7.6666777889988887776655667777766777766 PP

                      NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k g W+ + + k+v+++ ++ ++g k+ +v+ + ++p+ +  +W+m+e++l
  Itr_sc035183.1_g00001.1  91 KKPGNWHGQDEGKPVFDEkGKYVMGYKRCFVYKNRTEPE-QDGQWLMKEFSL 141
                              6699************98455569*******99766666.8*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-184170IPR003441NAC domain
PROSITE profilePS5100521.6497170IPR003441NAC domain
PfamPF023653.8E-99141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
PTCVMEIPLG LFFQPFDYDL VRFLFEFVTG TNNSEGLIHE EDIFGDKEPW ELIRYGPSEN  60
MVYFLTKLKK KGKLMTARRV ERTVGKKVKG KKPGNWHGQD EGKPVFDEKG KYVMGYKRCF  120
VYKNRTEPEQ DGQWLMKEFS LPETIVKKAR AAYPIVEERK DFVLCRLERK KDEEDEDEDD  180
ENSTLEQGGK DLEVETTSQI MAPSPVETLA VADDDINSNL IGEETLALTK DDMNSFLASL  240
AAADGGHHHD HNITGDTDMS SYFDGVPVPV PVGDTDIISS YLDGVPVPVP VGDTDIISSY  300
LDGIRVPVPA GDTDIISSYL DGVRVPIPAG DTGIISSYLD GVPVPVPAGD TDMSSYLVDV  360
PMETLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17792RRVERTVGKKVKGKKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152455.12e-76PREDICTED: NAC domain-containing protein 83-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216