PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc034048.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 231aa MW: 26945.7 Da PI: 6.9237

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc034048.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.8	7e-43	20	141	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +rF P+deel++ yL kkv++++l+ + i+ev++yk+ Pw+L +++++ +ek +yfF++ +ky++g+r+nra+ sg+Wkatg d Itr_sc034048.1_g00001.1 20 VRFCPSDEELIHSYLWKKVQNQPLPP-NKIHEVNLYKFSPWELSEMFETiGEKYCYFFTN--RKYKNGQRSNRAAGSGFWKATGAD 102 7********************999.77**********96554436667788876..57889*************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++k++ lvg +k Lvfy+g+ pkg+kt+W+m eyr+ Itr_sc034048.1_g00001.1 103 KSIMNKQKVLVGSRKALVFYEGKPPKGVKTNWIMYEYRV 141 ***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.369	16	163	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-50	18	163	IPR003441	NAC domain
Pfam	PF02365	5.1E-21	20	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEEFLVPDPT FVHDENTIVV RFCPSDEELI HSYLWKKVQN QPLPPNKIHE VNLYKFSPWE 60 LSEMFETIGE KYCYFFTNRK YKNGQRSNRA AGSGFWKATG ADKSIMNKQK VLVGSRKALV 120 FYEGKPPKGV KTNWIMYEYR VEGAPSPRPR GDDDWVLCRI YNKTDKSPEK KAAPKLSFLS 180 EQDEMDEMPA FYYLPMNEMP ASSDTKLKQL DCTYYIYAHN VITNEFQAAD L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-43	21	166	20	171	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:20005003}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157746.1	4e-79	PREDICTED: NAC transcription factor 32-like
Swissprot	A0SPJ8	2e-47	NAM1_HORVV; NAC transcription factor NAM-1
TrEMBL	K4D9G4	7e-54	K4D9G4_SOLLC; Uncharacterized protein
STRING	Solyc11g065540.1.1	1e-54	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	4e-47	NAC domain containing protein 102

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Jamar C, et al. NAM-1gene polymorphism and grain protein content in Hordeum. J. Plant Physiol., 2010. 167(6): p. 497-501 [PMID:20005003]