PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc033509.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29363.9 Da PI: 7.5226 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.4 | 1.8e-21 | 41 | 129 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn+ A+++GFsvrk k+++ ++++++++f C+k g ++++ ++ ++ t+ t+tgC+a+ + ++++gkw vtk ++eHn Itr_sc033509.1_g00001.1 41 DMYNDLASRMGFSVRKGKQYYFPGTRNVKSKKFHCYKAGLKTKQASA--NKCYTKIDTQTGCDAMCQFDLDSSGKWIVTKHVKEHN 124 58****************************************99988..8999********************************* PP FAR1 87 Helap 91 H l+p Itr_sc033509.1_g00001.1 125 HGLCP 129 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-18 | 42 | 129 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
GCNPSAGGGG TSTDANEDDS SIPANQELVG HSVYSLEEAF DMYNDLASRM GFSVRKGKQY 60 YFPGTRNVKS KKFHCYKAGL KTKQASANKC YTKIDTQTGC DAMCQFDLDS SGKWIVTKHV 120 KEHNHGLCPA YASYMLRSHR NISVDQLTYL KDMKRSGVPL SDGIRFLKHQ SGGSPFVGFT 180 DRDAYNIMLL DSAKHLDGTD SNTLIEIFRK RQLNESGFFF YFEVDDDARL CSFFWRDVQM 240 KSDYLLFGDL VVHDTTYRTN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019166533.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019180288.1 | 1e-123 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14143 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-28 | FAR1-related sequence 5 |