PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc033350.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 184aa MW: 21071.5 Da PI: 6.6283 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.8 | 2.6e-11 | 64 | 139 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y ++++ +GF++rk+k+ + +++ k+ +++++ ++++ ++++ trt C+a+++v+++++g++ev+ + HnH Itr_sc033350.1_g00001.1 64 YAQHSRALGFRTRKAKNLQG-------------TRKSKNLDNQSEvSSSKGKRKNITRTRCEASMRVRLNDEGVYEVAYHITSHNH 136 55555666666666665544.............22233333322233455567899****************************** PP FAR1 88 ela 90 +l+ Itr_sc033350.1_g00001.1 137 PLT 139 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-9 | 78 | 139 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEPENLCSDG NDETDEAFVD EQHLTCPTVL YNEENVMNGE NEVDICGSLE GLKRKTLDEM 60 YELYAQHSRA LGFRTRKAKN LQGTRKSKNL DNQSEVSSSK GKRKNITRTR CEASMRVRLN 120 DEGVYEVAYH ITSHNHPLTR KEWVHLHRSE REITSEKAQA IKTMISSGMR AVDSFRYMVQ 180 EAGG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_010665579.1 | 7e-32 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17460 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-10 | FAR1-related sequence 5 |