PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc032995.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 135aa MW: 14987.2 Da PI: 6.5022 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 27 | 1.5e-08 | 77 | 121 | 1 | 46 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +fY +Y vGF+vr s+ kk r+++++ + +vCs+eg+++ ++ Itr_sc032995.1_g00001.1 77 DFYLKYDALVGFDVRHSTVKKD-RDRKVVLKYLVCSREGYKSMSSG 121 6****************99998.666699999********998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-6 | 77 | 122 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MVQVSTVSPA SSFIAIVVYS LLFPAPVDHC DGVMFDEGEG GRVEISLGST RYWWPACEDG 60 SKPVTGQCFE TLDDGMDFYL KYDALVGFDV RHSTVKKDRD RKVVLKYLVC SREGYKSMSS 120 GRQISKVGVV TMVVR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152424.1 | 1e-30 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_019179567.1 | 1e-30 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |