PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc032379.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 267aa    MW: 28613.1 Da    PI: 7.7698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc032379.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.5e-181759345
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             i+ ksn +vtfskRr g++KKA+ LS+ C+a+va+i+fs+ g+
  Itr_sc032379.1_g00001.1 17 IQKKSNLEVTFSKRRIGLFKKASVLSTICGADVAIIVFSPAGN 59
                             899*************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.086758IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-23767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-21881IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-13929IPR002100Transcription factor, MADS-box
PfamPF003191.6E-191664IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MASRTSRGRQ RIEMVKIQKK SNLEVTFSKR RIGLFKKASV LSTICGADVA IIVFSPAGNK  60
VFSFGHPTVE AVVERFLGAN NPAPVNETGG GALATEQFIE AQRNARVQEL NMELTRLEAV  120
FEFEKKRGEA IDGFVEANRE AHGWMRGSYD DLSFEQLVTL ESGMKNLMKE IEQKAHHQLM  180
AMHENGTPFN PYAGGVSPNG NMVPRDPTFE FNFGTSGVPG AHPSTSGGST AATSAFLGSS  240
SMASGYNTVS PWVASTSGAS NSGGGNQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196307.11e-106PREDICTED: agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-43AGAMOUS-like 62