PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc032249.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 19825.4 Da PI: 9.8375 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 77 | 127 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g+ Itr_sc032249.1_g00001.1 77 YRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFRMRGA 127 9*******.***********9987..**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.23E-29 | 76 | 135 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-23 | 76 | 136 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-14 | 76 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.579 | 76 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-32 | 76 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 76 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MSDFALLESI RRQLLDDFDA PPVFCRRGSL GESGWLSSVD ETPTVAVEMG FYEFPVILDF 60 TAVPPPPPPP PAVKRNYRGV RRRPWGKFAA EIRDPAKNGA RVWLGTYETA EDAALAYDRA 120 AFRMRGARAL LNFPHRINSG EAEPVRITTN KRSASTDCSS SSSTTSENVS FKRWKKTA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-38 | 72 | 141 | 1 | 70 | ATERF1 |
3gcc_A | 2e-38 | 72 | 141 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC405081 | 2e-33 | KC405081.1 Salvia miltiorrhiza ERF1 (ERF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190741.1 | 2e-71 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | O80338 | 6e-45 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A484L2K0 | 3e-61 | A0A484L2K0_9ASTE; Uncharacterized protein | ||||
STRING | GLYMA11G03910.2 | 2e-46 | (Glycine max) | ||||
STRING | PGSC0003DMT400067535 | 6e-47 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47220.1 | 4e-36 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|