PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc028075.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Nin-like | ||||||||
Protein Properties | Length: 131aa MW: 14680.8 Da PI: 7.3877 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.1 | 9.6e-25 | 68 | 116 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e++s+yF++p+ +AA eLg+ T+LK +CR+ GI+RWPhRk+ksl Itr_sc028075.1_g00003.1 68 TLSREVISSYFHMPVCQAAEELGIEETTLKERCRKVGIPRWPHRKLKSL 116 7999*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.064 | 51 | 131 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.6E-21 | 68 | 116 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MKLLHPPSLI LLTAQFWDTP FGTVICSCQI VVSSDDTSVE SSEVGEVTIV EDNSSKKEGR 60 GRRPVPSTLS REVISSYFHM PVCQAAEELG IEETTLKERC RKVGIPRWPH RKLKSLEALM 120 KNVQVYSFNS S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FGD1 | 1e-18 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A1E5W6J3 | 1e-19 | A0A1E5W6J3_9POAL; Protein RKD1 (Fragment) | ||||
STRING | Pavir.J13146.1.p | 2e-19 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4274 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 2e-20 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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