PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc015035.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 62aa MW: 7278.36 Da PI: 4.7188

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc015035.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.1	1.7e-12	8	50	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Itr_sc015035.1_g00001.1 8 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 50 7***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.385	1	54	IPR017930	Myb domain
SMART	SM00717	5.5E-11	5	52	IPR001005	SANT/Myb domain
CDD	cd11659	2.88E-29	7	53	No hit	No description
SuperFamily	SSF46689	2.01E-13	7	56	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-12	8	51	IPR009057	Homeodomain-like
Pfam	PF13921	3.0E-11	9	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MLLNFPTEWT REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAACAKDENY 60 EA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2din_A	1e-24	7	59	10	62	Cell division cycle 5-like protein
3jb9_W	2e-22	7	57	59	109	Pre-mRNA-splicing factor cdc5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020253933.1	2e-32	cell division cycle 5-like protein, partial
Swissprot	P92948	2e-31	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A1D6N2M2	2e-31	A0A1D6N2M2_MAIZE; CDC5 protein
TrEMBL	C5YNT7	7e-31	C5YNT7_SORBI; Uncharacterized protein
STRING	Sb08g015280.1	1e-31	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17957	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	7e-34	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]