PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc014703.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 126aa MW: 14836.4 Da PI: 11.238 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 26.7 | 6.4e-09 | 7 | 67 | 34 | 116 |
GRAS 34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiD 116 +++p +R+a yf eAL + l++ +p + + +++a i kf+hltaNqaI ea+e++ ++HiiD Itr_sc014703.1_g00001.1 7 ARRPDERVAYYFSEALYNCLSN---------SPDKRP-----ANFKA---------ISKFAHLTANQAIREATEKAsLKIHIID 67 5566777777777777777776.........222222.....12222.........67*****************97899**** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.2E-6 | 7 | 67 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MRLRFPARRP DERVAYYFSE ALYNCLSNSP DKRPANFKAI SKFAHLTANQ AIREATEKAS 60 LKIHIIDPER VKVESLLLGW RKSPVPHLTR RRLTKATRFR EVCGVKEMDR RLRFEITKLS 120 LHLTLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 7e-11 | GRAS family protein |