PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc013822.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 140aa MW: 15486.8 Da PI: 9.9648 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 8e-10 | 13 | 44 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg W++eEde++++ + +G g+W+++++ g Itr_sc013822.1_g00001.1 13 RGLWSPEEDEKFIKHLATHGYGCWSSVPKLAG 44 789**************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 5 | 42 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 8 | 41 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.45E-8 | 8 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-8 | 13 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.70E-7 | 16 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGHHCCGKHK VKRGLWSPEE DEKFIKHLAT HGYGCWSSVP KLAGTSIYLP YPLPPPSSRR 60 QISPDLAFSA PARRLKTKPQ PPPATLFASS TMDSPCIYVF TNYKHLKSKS NQIKDLVSSS 120 ITKAVMYCSS SDQQSLGSSF |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17409 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-21 | myb domain protein 67 |