PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc013001.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25641.8 Da PI: 8.6739 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5.2e-19 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eEd+l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l Itr_sc013001.1_g00001.1 10 RGNFTPEEDDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-16 | 1 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 1 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.306 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-17 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-17 | 10 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.90E-14 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MNYLRPGIKR GNFTPEEDDL IVRLHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLLKKLK 60 SEGIEPKPRK ASRTIPKKKK TAKPDKTGSE KRKKHRPVSK PDVKDRPEMI KVYAPRPVRL 120 STGFARNYSF DDLAASVASS SGNNKAEDNN NTPLNHNGNN NKAEESTGFP WDLYEVGDDL 180 FDDYMDGCDL TARYSLPTSD TLLEKVYDEY LQLLSEDCCL QTCSSC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-14 | 2 | 59 | 51 | 108 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 77 | 93 | KKKTAKPDKTGSEKRKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019169050.1 | 1e-113 | PREDICTED: myb-related protein 308-like | ||||
Refseq | XP_019169051.1 | 1e-113 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A1S3WYM3 | 2e-62 | A0A1S3WYM3_TOBAC; transcription factor MYB3-like | ||||
TrEMBL | A0A1U7XK33 | 2e-62 | A0A1U7XK33_NICSY; transcription factor MYB3-like | ||||
STRING | XP_009792412.1 | 3e-63 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-34 | myb domain protein 3 |