PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc012729.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20487.2 Da PI: 8.4909 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.4 | 8.9e-42 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r ++++slvyeA++r+rdPvyG++g i++lqqq Itr_sc012729.1_g00001.1 20 PCAACKLLRRRCTQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPERQRAETANSLVYEANVRLRDPVYGCMGAISALQQQ 105 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 ++ l+ael+++++e Itr_sc012729.1_g00001.1 106 VQALQAELNAVRAE 119 **********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.548 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-42 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGRRPPPPPS PGGTLNTITP CAACKLLRRR CTQECPFSPY FSPHEPHKFA SVHKVFGASN 60 VSKMLMEVPE RQRAETANSL VYEANVRLRD PVYGCMGAIS ALQQQVQALQ AELNAVRAEI 120 MRYKFGEATN NDINTIPSSH HHHHASSLLS SGVVSVAAPP PSSASLYTPP PSSSAADFGI 180 VSSENISYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 8 | 127 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 8 | 127 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019200204.1 | 1e-118 | PREDICTED: LOB domain-containing protein 15-like isoform X1 | ||||
Swissprot | Q9AT61 | 1e-68 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A200QQC5 | 4e-86 | A0A200QQC5_9MAGN; Uncharacterized protein | ||||
TrEMBL | A0A218WC16 | 6e-86 | A0A218WC16_PUNGR; Uncharacterized protein | ||||
STRING | EOY20040 | 2e-85 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-60 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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