PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc012560.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 26291.8 Da PI: 9.2251 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.7 | 3.7e-13 | 15 | 106 | 7 | 90 |
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 A++ GF+vr s+ k++ r g + + + Cs+eg++ +++++ ++ + r+r+++r+gC a+ +k+ kdg++ ++ l + Itr_sc012560.1_g00001.1 15 ATSQGFDVRSSTVKRN-RYGDVELKYLLCSREGYTVTKEQRstttgeangANINTRRRVSNRVGCMARCALKRLKDGHYAINVLIE 99 7789********9999.6666999**********98888878999999888888899***************************** PP FAR1 84 eHnHela 90 H H l+ Itr_sc012560.1_g00001.1 100 THKHRLC 106 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.7E-10 | 15 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSNGGSGQIL TLRPATSQGF DVRSSTVKRN RYGDVELKYL LCSREGYTVT KEQRSTTTGE 60 ANGANINTRR RVSNRVGCMA RCALKRLKDG HYAINVLIET HKHRLCDKEA NKFLKINRNL 120 GIGHQVFIAA CEKANIGTSK AFELYSVLGG GVDSVGATCI DFRNCRRDVQ AQVHNADAQS 180 IIEKYAKKKT LFATYTFDYD VDDEQKLCRV FWCDPIAKQN YLQFGEMVSF DATY |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-17 | FAR1-related sequence 5 |