PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc012176.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 24273.8 Da PI: 5.7203 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 12 | 51 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eE+ lv++++qlG++ W+ Ia++++ gR+++++k++w+ Itr_sc012176.1_g00001.1 12 WSEEEERVLVEVHEQLGNR-WSEIAKRIP-GRSENSIKNHWN 51 *******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.185 | 1 | 58 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-18 | 8 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 8 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.1E-15 | 8 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-15 | 12 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-6 | 29 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MNRYYIVTKE WWSEEEERVL VEVHEQLGNR WSEIAKRIPG RSENSIKNHW NATMRRQLSK 60 RRMRSASLQD VGGSRKSVVL HNYIKYKYFS GLALGPLVPV PEHPSIQQQV NVDDSPSILT 120 ETYDEEMTFL QKLFGNSSSS SPSTAVNNNS AEFAAFGRRT NEDSVAAEEE DSWSTYLATD 180 PNLYEIGGAD QINSTPQAAA PKPLAKSSNY YLNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1idy_A | 2e-18 | 7 | 58 | 3 | 54 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
1idz_A | 2e-18 | 7 | 58 | 3 | 54 | MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178330.1 | 8e-91 | PREDICTED: myb-related protein B-like | ||||
TrEMBL | A0A328DBS5 | 4e-47 | A0A328DBS5_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484NCI6 | 3e-48 | A0A484NCI6_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-18 | myb domain protein 119 |