PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc010212.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 516aa MW: 58035 Da PI: 8.9592

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc010212.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.4	3.1e-10	108	155	47	90
FAR1 47 k....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + + k+rr+r+++r+gC+ak+ ++ +g+++v++++++HnH+l+ Itr_sc010212.1_g00001.1 108 EvvdfSAKQRRRRTSNRVGCNAKIGFRRIATGEYVVNDFVENHNHSLC 155 1445567999*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-7	112	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-12	217	301	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
TGCGARTGQE GTGASTTRRR PRGGLATISR GRAWLAARSA SLSVRGTLSP AEQEFCGDAS 60 ELNVELEHCT EGIFPGGSKS WVPTCDDAYV RYVGCRSGSM SKFIVEEEVV DFSAKQRRRR 120 TSNRVGCNAK IGFRRIATGE YVVNDFVENH NHSLCSESAK MFLRVNRKLD ISQQTFIVNC 180 GLANIGPSKC LRAYKEVVGG YENVGETRRN YSRFGDIVSF DAMYGTNKWC FLRLWYSLVL 240 VPFTGVDNHK RCITFAVGLL AKEDVDSYSW LLANFKNSMG RPPLCFVTNQ DAAIKVQWSS 300 LMLEYNLTDN HWFASLFEVR KFWIPAFFSD MFMGALIRTT SRSEGENSAF ECEGSLPEFK 360 TSLEIERHAG ATFTTTIFYE LRCISSQYIV SRWTKQPCEQ FNIVSRPTAE EHSDGVPSTK 420 SLTQQLWKEM HACIGLVRVG TSPKHIARMT DVLKEMKVDF SHEIDGEDHG KAKNKGSGKR 480 IKSKREIAIQ ARTKFKRTCH TCDKALGHDS RNCPLR

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

TGCGARTGQE GTGASTTRRR PRGGLATISR GRAWLAARSA SLSVRGTLSP AEQEFCGDAS  60
ELNVELEHCT EGIFPGGSKS WVPTCDDAYV RYVGCRSGSM SKFIVEEEVV DFSAKQRRRR  120
TSNRVGCNAK IGFRRIATGE YVVNDFVENH NHSLCSESAK MFLRVNRKLD ISQQTFIVNC  180
GLANIGPSKC LRAYKEVVGG YENVGETRRN YSRFGDIVSF DAMYGTNKWC FLRLWYSLVL  240
VPFTGVDNHK RCITFAVGLL AKEDVDSYSW LLANFKNSMG RPPLCFVTNQ DAAIKVQWSS  300
LMLEYNLTDN HWFASLFEVR KFWIPAFFSD MFMGALIRTT SRSEGENSAF ECEGSLPEFK  360
TSLEIERHAG ATFTTTIFYE LRCISSQYIV SRWTKQPCEQ FNIVSRPTAE EHSDGVPSTK  420
SLTQQLWKEM HACIGLVRVG TSPKHIARMT DVLKEMKVDF SHEIDGEDHG KAKNKGSGKR  480
IKSKREIAIQ ARTKFKRTCH TCDKALGHDS RNCPLR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-14	far-red elongated hypocotyls 3