PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc009936.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 30764.7 Da PI: 8.1733 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k++G g+W+t ++ g+ R++k+c++rw +yl Itr_sc009936.1_g00001.1 14 KGAWTKEEDDRLIRYIKKHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 67 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........................................-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........................................tWktIartmgkgRtlkqcksr 43 rg++T+eEdel+++++ +lG++ +W++Ia++++ gRt++++k++ Itr_sc009936.1_g00001.1 67 RGNFTEEEDELIINLHSLLGNNcaeqmsfihstplqypftttaylfnttavffqhncsishdhgsRWSLIAARLP-GRTDNEIKNY 151 89*************************************************************************.********** PP HHHH CS Myb_DNA-binding 44 wqky 47 w+++ Itr_sc009936.1_g00001.1 152 WNTH 155 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.151 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.31E-23 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 9.535 | 62 | 156 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 65 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 66 | 158 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.72E-10 | 67 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.62E-9 | 69 | 156 | No hit | No description |
Pfam | PF00249 | 4.2E-9 | 127 | 155 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.72E-10 | 128 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 130 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDDRLIRYIK KHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN LHSLLGNNCA EQMSFIHSTP LQYPFTTTAY LFNTTAVFFQ 120 HNCSISHDHG SRWSLIAARL PGRTDNEIKN YWNTHIKRKL LSRGIDPQTH RPLTTSAAGA 180 AAVITPATPT PQQPSPTTSS GGLSSSEETT YLNLELSISL PTPTDDEHCN SGTSHAVCLC 240 QKLGFQSGNA CNCSKMAASI NYAARDGMQT FFTPLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-23 | 14 | 160 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019200551.1 | 9e-97 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q9SZP1 | 1e-82 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A287G8M5 | 4e-89 | A0A287G8M5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_71041.1 | 1e-88 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-76 | myb domain protein 7 |