PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc007895.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 188aa    MW: 21007.9 Da    PI: 4.3672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc007895.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-16453255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +ykGVr +k +g+Wv+eIr p++   r r++lg++  +e+Aa+a + a  +l+g
  Itr_sc007895.1_g00001.1  4 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYNAPEKAARAFDVAQYCLRG 53
                             8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-27363No hitNo description
PROSITE profilePS5103221.377461IPR001471AP2/ERF domain
SMARTSM003803.3E-31467IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-28462IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-20462IPR016177DNA-binding domain
PfamPF008474.3E-10453IPR001471AP2/ERF domain
PRINTSPR003671.4E-8516IPR001471AP2/ERF domain
PRINTSPR003671.4E-82743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEAKYKGVRK RKWGKWVSEI RLPNSRERIW LGSYNAPEKA ARAFDVAQYC LRGPTARFNF  60
PDDPPDVPGG KWLSPAEIQD VAAHSGNNYR LEPLPENGGG GNGDGGVRDD DNTHVVEIND  120
TSTSSSGGVQ LEGIDWSFLD NLDAPFTSND YFGLFHGDVY VPPNDYEIEY EDGESIGHFS  180
QQSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-144631474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511KGVRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179283.11e-112PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLB9IKF65e-54B9IKF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s08320.18e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.15e-45ERF family protein