PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc007449.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 302aa    MW: 33868.4 Da    PI: 7.6027
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc007449.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1392.6e-1260122268
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 
                               Y++YA +vGF+ r+s+++k ++ g i+ ++ vCs+eg++++++++   ++r+r+ +r+gCkak ++
  Itr_sc007449.1_g00001.1  60 LYKQYAGSVGFDCRQSTTRKGRDCG-IVLKHVVCSREGFKHRDRSD---AKRRRVFSRVGCKAKANI 122
                              6****************99997777.99999**********99888...9999**********9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-960122IPR004330FAR1 DNA binding domain
PfamPF105512.6E-21213295IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSASGGCDE SYSTDIGVEV SACDMEISPG MTKYWRPICA NSLKPHVGQQ FDSLDSAFGL  60
YKQYAGSVGF DCRQSTTRKG RDCGIVLKHV VCSREGFKHR DRSDAKRRRV FSRVGCKAKA  120
NIGPTRSYRL FKEIVGDYSN VGATSVDFQN FKRDLMAYIL NGDAQLFIDM LFKRRELCEA  180
FGFEYDVDEA DRLSRVLLTD AVSRKNFSLF GDVVSFDATY RTNRYNLVFV PFTSIDNHKR  240
CITFGAGLLT KEDIDSYVWL LESFKKIMGH DPICVVTDQD PAVKVAVAQV FGSSNTDFVC  300
GI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158566.11e-151PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019176283.11e-151PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019189534.11e-153PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A484LBC48e-89A0A484LBC4_9ASTE; Uncharacterized protein
TrEMBLA0A484MZF62e-90A0A484MZF6_9ASTE; Uncharacterized protein
STRINGXP_010666566.12e-80(Beta vulgaris)
STRINGXP_010670287.15e-84(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-35FAR1-related sequence 5