PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc007261.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 587aa MW: 66789.6 Da PI: 8.055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc007261.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.6e-20	77	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwev 78 fY+ YA e+GF+vr s +k+ ++g i r + Cs+eg+++++++ +++ r+r+++r++C+a+ ++k++kdg++ v Itr_sc007261.1_g00001.1 77 FYKLYAVEAGFDVRCSIVRKN-KEGYIEVRYLLCSREGHTTSTTDGtncndedatPNTKTRRRVSNRVDCNARCVIKRRKDGVYAV 161 9**************9999.6777**********9998888999999988889999******************** PP FAR1 79 tkleleHnHelap 91 t +e++HnH+l++ Itr_sc007261.1_g00001.1 162 TIFEEKHNHPLCS 174 *********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-17	77	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-20	271	342	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MEAIELFEDD NNMDSSDRNV MAEENIVPAP NDAEGNIESS GVHSWQGDNN YFIPECCEKE 60 KPIIRQQFAS MEEGVAFYKL YAVEAGFDVR CSIVRKNKEG YIEVRYLLCS REGHTTSTTD 120 GTNCNDEDAT PNTKTRRRVS NRVDCNARCV IKRRKDGVYA VTIFEEKHNH PLCSESGRMF 180 LKINRSLDVG DQEFISACAK ANIGTSKEFE LYAELTGGFD KVGATCVDFR NCKRDVNAYL 240 HEADAQAVQL RGLFWADPIA KENYQRFGDM VSFDATYSTN RYNMVFVPFT GIDNNKKCVT 300 FGAGLISKEN KESYVWLLNA FKRCMGHIPA CVITDQDPAM KERHKQARLD AECESSLPPT 360 KTPLLIEKHA TSVYTITMFY DVQTEIFEGC FSCKIRNKEQ TDEKHAFVVL KDNDAEMIPT 420 KYVLDRWKKN SCIQETSSTG KGGSGRSSRE EENSKLAPKL CKEFYNYLAL SKENTVKMQE 480 MMTFMMENKE KMVTRNAKAR DKSKNSELLE IFYGAQTSSI ITVKPPQLSK NKGSGKRLKS 540 AREKSVEKKK QDGRKCHYCG QKPARHDFRN CLLNPNSKEN PKNKEKA

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MEAIELFEDD NNMDSSDRNV MAEENIVPAP NDAEGNIESS GVHSWQGDNN YFIPECCEKE  60
KPIIRQQFAS MEEGVAFYKL YAVEAGFDVR CSIVRKNKEG YIEVRYLLCS REGHTTSTTD  120
GTNCNDEDAT PNTKTRRRVS NRVDCNARCV IKRRKDGVYA VTIFEEKHNH PLCSESGRMF  180
LKINRSLDVG DQEFISACAK ANIGTSKEFE LYAELTGGFD KVGATCVDFR NCKRDVNAYL  240
HEADAQAVQL RGLFWADPIA KENYQRFGDM VSFDATYSTN RYNMVFVPFT GIDNNKKCVT  300
FGAGLISKEN KESYVWLLNA FKRCMGHIPA CVITDQDPAM KERHKQARLD AECESSLPPT  360
KTPLLIEKHA TSVYTITMFY DVQTEIFEGC FSCKIRNKEQ TDEKHAFVVL KDNDAEMIPT  420
KYVLDRWKKN SCIQETSSTG KGGSGRSSRE EENSKLAPKL CKEFYNYLAL SKENTVKMQE  480
MMTFMMENKE KMVTRNAKAR DKSKNSELLE IFYGAQTSSI ITVKPPQLSK NKGSGKRLKS  540
AREKSVEKKK QDGRKCHYCG QKPARHDFRN CLLNPNSKEN PKNKEKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	154	RRRVSNRVDCNARCVIKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A484MZF6	1e-116	A0A484MZF6_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-35	FAR1-related sequence 5